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Sample GSM36490 Query DataSets for GSM36490
Status Public on Apr 01, 2005
Title Nor:HIF2a rep 2
Sample type RNA
 
Channel 1
Source name HIF2a transfectant
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Normoxia 16hs
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 44964
Comparison of HIF2a transfected cells with untreated cells
Array Print: Hs-OperonV2-vB1.1p9-042203
cell_line: HEK293T
 
Submission date Nov 29, 2004
Last update date May 18, 2006
Contact name Victoria Wang
E-mail(s) wangv@mail.nih.gov
Phone 301-402-3630
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2020 Differential Gene Up-regulation by HIF-1a and HIF-2a in HEK293T.

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 1.398 1 1 1 183 302 120 99 236 203 174 91 -50 0.483
1174364_1 0.069 1.049 1 1 2 2489 451 115 60 3279 711 166 74 0 0.069
1175152_1 0.527 1.441 1 1 3 3594 922 124 1175 3481 916 169 867 0 0.527
1175940_1 0.737 1.666 1 1 4 6713 1648 129 1173 5609 1931 174 869 0 0.737
1176716_1 0.889 1.852 1 1 5 3832 649 123 99 2924 538 169 130 0 0.889
1177504_1 0.739 1.669 1 1 6 8856 1822 126 98 7368 1378 172 107 0 0.739
1178580_1 -0.274 0.827 1 1 7 2785 896 127 74 4606 1416 186 139 0 -0.274
1179356_1 0.057 1.040 1 1 8 753 218 114 691 1035 211 190 416 0 0.057
1180144_1 0.221 1.166 1 1 9 4686 775 101 691 5554 819 145 408 0 0.221
1180932_1 -0.335 0.793 1 1 10 355 258 99 90 585 168 141 82 0 -0.335
1181708_1 -0.086 0.942 1 1 11 600 233 89 72 876 305 130 56 0 -0.086
1182496_1 -0.747 0.596 1 1 12 172 58 91 48 311 66 124 45 0 -0.747
1183572_1 -0.026 0.982 1 1 13 1066 319 93 48 1481 444 118 45 0 -0.026
1184348_1 -0.319 0.802 1 1 14 332 141 93 43 526 166 116 42 0 -0.319
1185136_1 -0.565 0.676 1 1 15 208 120 94 52 376 100 144 62 0 -0.565
1185924_1 -0.097 0.935 1 1 16 284 144 91 45 401 152 117 43 0 -0.097
1186700_1 0.063 1.045 1 1 17 2208 666 90 46 2894 975 106 45 0 0.063
1187488_1 0.133 1.096 1 1 18 949 331 100 52 1181 296 116 63 0 0.133
1188564_1 0.103 1.074 1 1 19 7641 2166 104 53 9776 3572 125 69 0 0.103
1189340_1 -0.305 0.810 1 1 20 588 204 93 38 956 311 115 36 0 -0.305

Total number of rows: 21794

Table truncated, full table size 1477 Kbytes.




Supplementary data files not provided
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