|
| Status |
Public on Mar 31, 2021 |
| Title |
FFPE Breast Cancer 31690, TNC, BRCA+ |
| Sample type |
genomic |
| |
|
| Source name |
FFPE breast cancer tissue
|
| Organism |
Homo sapiens |
| Characteristics |
ki67 ihq: <15
p53 ihq: -
histologic grade: 2
hormone receptor (hr): -
her2 ihq: -
subtype: TNC
brca status: BRCA+
tissue: FFPE breast cancer tissue
|
| Treatment protocol |
Not applicable
|
| Growth protocol |
Not applicable
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNAs were extracted according to manufacturer's protocols.
|
| Label |
biotin
|
| Label protocol |
Labelling and hybridizations were performed according to protocols from Affymetrix
|
| |
|
| Hybridization protocol |
DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
|
| Scan protocol |
The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.
|
| Description |
Sample name: 31690
|
| Data processing |
ChAS console from Affymetrix was used to assess genome wide copy number
Weighted Log2 Ratios
|
| |
|
| Submission date |
Mar 20, 2019 |
| Last update date |
Mar 31, 2021 |
| Contact name |
Juan Luis Garcia |
| E-mail(s) |
jlgarcia@usal.es
|
| Phone |
+34923294812
|
| Organization name |
Centro de Investigación del Cáncer IBMCC-CIC
|
| Lab |
Laboratorio 12
|
| Street address |
Campus Miguel de Unamuno
|
| City |
Salamanca |
| State/province |
Salamanca |
| ZIP/Postal code |
37007 |
| Country |
Spain |
| |
|
| Platform ID |
GPL18637 |
| Series (2) |
| GSE128583 |
Chromothripsis is a prognostic factor in early-onset breast cancer [CytoScan750K_Array] |
| GSE128587 |
Chromothripsis is a prognostic factor in early-onset breast cancer |
|
