|
| Status |
Public on Aug 20, 2020 |
| Title |
P0_HPC_BM scRNA-seq |
| Sample type |
SRA |
| |
|
| Source name |
Hematopoietic progenitor cell
|
| Organism |
Mus musculus |
| Characteristics |
strain background: B6
age: P0
tissue: Hematopoietic progenitor cell
|
| Extracted molecule |
total RNA |
| Extraction protocol |
10x Genomcis Chromium single cell preparation
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
| |
|
| Description |
scRNA-seq
|
| Data processing |
Generation of fastq files via https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest
Alignment to mm10 genome build via https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest
Genome_build: mm10
Supplementary_files_format_and_content: barcodes.tsv, genes.tsv, matrix.mtx
|
| |
|
| Submission date |
Mar 24, 2019 |
| Last update date |
Aug 21, 2020 |
| Contact name |
Jeffery Magee |
| E-mail(s) |
magee_j@kids.wustl.edu
|
| Organization name |
Washington University School of Medicine
|
| Department |
Internal Medicine - Cardiovascular Division
|
| Street address |
660 S Euclid Ave.
|
| City |
St Louis |
| State/province |
Missouri |
| ZIP/Postal code |
63110 |
| Country |
USA |
| |
|
| Platform ID |
GPL21493 |
| Series (2) |
| GSE128761 |
Neonatal hematopoietic stem and progenitor cell ontogeny at single cell resolution (scRNA-seq) |
| GSE128762 |
Neonatal hematopoietic stem and progenitor cell ontogeny at single cell resolution |
|
| Relations |
| BioSample |
SAMN11245118 |
| SRA |
SRX5565560 |
