NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM37 Query DataSets for GSM37
Status Public on Jan 24, 2001
Title NHGRI_UACC-2534
Sample type RNA
 
Channel 1
Source name melanoma, abdomen
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: adbomen
Patient sex: male
Patient age: 68
Passage number: 7
p16 mutation status: deleted
Invasive ability: 3.2 +/- 0.02%
Vasculogenic mimicry: -
Gel contraction: ND
Cell motility: ND
Scratch wound (%): 7

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 54 142 72 160 5523176 42124.6 19008.5 133 2060.8 372.7 54 142 72 160 5771211 42360.1 20947.3 121 3809.6 551.6 133 0.994 -0.1469103 99.000 0.541 3.590 1.394 0.221 0.713
2 671 152 689 170 197612 4307.3 2429.4 39 2067.3 295.6 671 152 689 170 187965 1994.2 1342.9 0 4069.2 438.1 39 2.160 0.1903323 99.000 0.541 3.590 1.394 0.221 1.550
3 90 142 108 160 119393 3257.0 1142.7 31 1934.0 301.8 90 142 108 160 153071 3100.0 1253.4 0 3555.2 362.4 31 1.051 -0.1226293 99.000 0.541 3.590 1.394 0.221 0.754
4 707 152 725 170 183587 3963.3 2625.8 38 2156.3 328.8 707 152 725 170 179365 1827.7 1081.7 0 4151.1 439.3 38 2.168 0.1920103 99.000 0.541 3.590 1.394 0.221 1.556
5 127 142 145 160 807400 8804.6 5528.9 83 1960.7 311.2 127 142 145 160 478924 2733.7 2217.6 38 3652.0 415.9 83 3.221 0.3638003 99.000 0.541 3.590 1.394 0.221 2.311
6 744 152 762 170 1241275 19176.4 17569.4 60 2224.9 333.0 744 152 762 170 1362315 19281.0 19429.7 64 4207.2 435.5 66 0.995 -0.1463023 99.000 0.541 3.590 1.394 0.221 0.714
7 163 142 181 160 1487160 12529.8 4865.4 110 2050.2 346.0 163 142 181 160 901703 5243.6 2952.4 98 3596.6 387.8 110 2.390 0.2340113 99.000 0.541 3.590 1.394 0.221 1.714
8 780 152 798 170 798300 21179.1 17767.9 39 2300.3 338.6 780 152 798 170 544667 11733.5 10519.1 32 4286.1 477.6 42 1.805 0.1122703 99.000 0.541 3.590 1.394 0.221 1.295
9 200 141 218 159 558968 5009.6 2883.1 88 1977.5 294.7 200 141 218 159 505501 2508.9 1805.9 56 3809.8 467.3 88 1.997 0.1562463 99.000 0.541 3.590 1.394 0.221 1.433
10 817 152 835 170 1 1.0 0.0 0 2296.4 344.6 817 152 835 170 1 1.0 0.0 0 4374.0 444.8 0 1.000 -0.1444813 99.000 0.541 3.590 1.394 0.221 0.717
11 236 141 254 159 464964 4713.1 3037.0 75 2025.6 296.3 236 141 254 159 1059859 11536.7 7180.5 59 3823.6 428.8 77 0.409 -0.5331323 99.000 0.541 3.590 1.394 0.221 0.293
12 853 153 871 171 1 1.0 0.0 0 2234.9 304.7 853 153 871 171 1 1.0 0.0 0 4442.2 483.6 0 1.000 -0.1444813 99.000 0.541 3.590 1.394 0.221 0.717
13 54 764 72 782 1007161 11781.7 3237.1 81 2015.0 335.6 54 764 72 782 687762 5874.0 2269.6 76 3547.4 462.5 81 2.006 0.1580613 99.000 0.541 3.590 1.394 0.221 1.439
14 659 759 677 777 1238489 15587.8 5982.9 78 2104.9 333.8 659 759 677 777 732013 6660.5 3532.5 65 3796.8 415.0 78 2.340 0.2250513 99.000 0.541 3.590 1.394 0.221 1.679
15 90 764 108 782 913979 10290.5 3039.8 82 2060.5 352.9 90 764 108 782 1383290 15068.7 6107.2 73 3624.5 470.1 82 0.683 -0.3098043 99.000 0.541 3.590 1.394 0.221 0.490
16 695 759 713 777 484568 6404.0 3712.0 65 2097.1 337.3 695 759 713 777 385657 2797.5 2003.0 45 3968.5 478.5 65 2.289 0.2153733 99.000 0.541 3.590 1.394 0.221 1.642
17 127 763 145 781 935945 9776.5 3724.9 87 2070.9 348.5 127 763 145 781 805402 6516.7 3310.1 71 3678.3 524.3 87 1.500 0.0318123 99.000 0.541 3.590 1.394 0.221 1.076
18 732 760 750 778 294859 2739.1 1361.0 65 2094.7 305.0 732 760 750 778 406628 2822.2 1164.1 62 3843.9 411.0 69 0.971 -0.1573913 99.000 0.541 3.590 1.394 0.221 0.696
19 163 763 181 781 847324 9403.5 4632.3 81 2203.7 377.5 163 763 181 781 865356 8059.5 4322.8 40 3794.7 545.9 81 1.167 -0.0772753 99.000 0.541 3.590 1.394 0.221 0.837
20 769 760 787 778 452355 5494.9 2895.3 67 2172.1 328.6 769 760 787 778 376660 2410.2 1522.6 36 3973.9 428.8 67 2.280 0.2137833 99.000 0.541 3.590 1.394 0.221 1.636

Total number of rows: 8192

Table truncated, full table size 1287 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap