|
| Status |
Public on May 04, 2019 |
| Title |
yeeA deletion |
| Sample type |
SRA |
| |
|
| Source name |
Bacillus subtilis PY79
|
| Organism |
Bacillus subtilis PY79 |
| Characteristics |
strain: TMN5
genotype/variation: yeeA deletion
|
| Growth protocol |
Cells were grown in S750 defined media at 30C with shaking to mid-log phase (OD600 of 0.5)
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was purified via CsCl gradient
Library construction was performed by the University of Michigan Sequencing Core, 5kb mean insert size
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
PacBio RS II |
| |
|
| Data processing |
Data processing was performed using RS_Modification_and_Motif_analysis.1 version 2.3.0 from SMRT portal
Genome_build: Bacillus subtilis PY79, accession no CP006881
Supplementary_files_format_and_content: csv file with the identified modified motifs
|
| |
|
| Submission date |
May 03, 2019 |
| Last update date |
May 04, 2019 |
| Contact name |
Taylor Nye |
| E-mail(s) |
tnye@umich.edu
|
| Organization name |
University of Michigan
|
| Department |
MCDB
|
| Lab |
Simmons Lab
|
| Street address |
1105 N University Ave
|
| City |
Ann Arbor |
| ZIP/Postal code |
48109 |
| Country |
USA |
| |
|
| Platform ID |
GPL26620 |
| Series (2) |
| GSE130693 |
Genomic N6-methyladenosine promotes expression of genes important for chromosome maintenance in bacteria [pacbio_DnmA] |
| GSE130695 |
Genomic N6-methyladenosine promotes expression of genes important for chromosome maintenance in bacteria |
|
| Relations |
| BioSample |
SAMN11570013 |
| SRA |
SRX5785979 |
