GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM37482

Query DataSets for GSM37482

Status

Public on Mar 02, 2005

Title

MIN6 cell, GFP Forskolin 2

Sample type

RNA

Source name

Mouse pancreatic beta cell line MIN6

Organism

Mus musculus

Extracted molecule

total RNA

Description

Culture of mouse MIN6 cells, infected with GFP control adenovirus, with 1hr forskolin (a cAMP agonist) treatment. RNA was extracted using the Qiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA. 2 control and 2 forskolin treated samples from GFP virus infected cells, and 2 forskolin treated samples from ACREB virus infected cells were analyzed. Data was analyzed using dChIP software (www.dchip.org).
Keywords = MIN6, cAMP induced genes, forskolin, CREB target genes

Submission date

Dec 10, 2004

Last update date

May 27, 2005

Contact name

Xinmin Zhang

E-mail(s)

xzhang@salk.edu

Phone

858-453-4100 x1157

Organization name

Salk Institute

Street address

10010 N. Torrey Pines Rd.

City

La Jolla

State/province

ZIP/Postal code

92037

Country

USA

Platform ID

GPL81

Series (1)

GSE2060

Characterize CREB target genes in different tissue types

Data table header descriptions
ID_REF
VALUE	'expression index' a measure of the abundance of a transcript, determined using the dChip software with PM-MM models.

Data table
ID_REF	VALUE
AFFX-MurIL2_at	228.48
AFFX-MurIL10_at	106.075
AFFX-MurIL4_at	29.5143
AFFX-MurFAS_at	974.438
AFFX-BioB-5_at	260.654
AFFX-BioB-M_at	270.75
AFFX-BioB-3_at	463.592
AFFX-BioC-5_at	959.352
AFFX-BioC-3_at	853.277
AFFX-BioDn-5_at	692.349
AFFX-BioDn-3_at	2848.93
AFFX-CreX-5_at	6867.76
AFFX-CreX-3_at	8935.94
AFFX-BioB-5_st	352.023
AFFX-BioB-M_st	160.049
AFFX-BioB-3_st	217.592
AFFX-BioC-5_st	768.701
AFFX-BioC-3_st	255.949
AFFX-BioDn-5_st	871.345
AFFX-BioDn-3_st	585.352

Total number of rows: 12488

Table truncated, full table size 217 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM37482.CEL.gz	2.8 Mb	(ftp)(http)	CEL
GSM37482.EXP.gz	260 b	(ftp)(http)	EXP