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Sample GSM37575 Query DataSets for GSM37575
Status Public on Dec 15, 2005
Title Ren-2 Diabetic 1
Sample type RNA
 
Channel 1
Source name Reference kidney total RNA
Organism Rattus norvegicus
Extracted molecule total RNA
 
Channel 2
Source name Ren-2 diabetic kidney total RNA
Organism Rattus norvegicus
Extracted molecule total RNA
 
 
Description Sprague Dawley compared to Ren-2 study
 
Submission date Dec 14, 2004
Last update date May 29, 2005
Contact name Maria Schache
E-mail(s) mschache@svi.edu.au
Phone 613 9288 2670
Organization name St Vincents Institute
Department
Street address
City Melbourne
ZIP/Postal code 3052
Country Australia
 
Platform ID GPL1747
Series (1)
GSE2068 Sprague Dawley vs Ren-2

Data table header descriptions
ID_REF
X X coordinate
Y Y coordinate
Dia. Spot diameter
CH1_RAW Cy5 intensity (median)
F635 Mean Cy5 intensity (mean)
CH1_SD Cy5 intensity stdev
CH1_BKD_RAW Cy5 background (median)
B635 Mean Cy5 background (mean)
CH1_BKD_SD Cy5 background stdev
% > B635+1SD Cy5 background error 1
% > B635+2SD CY5 background error 2
F635 % Sat. CY5 percentage of saturated pixels
CH2_RAW Cy3 intensity (median)
F532 Mean Cy3 intensity (mean)
CH2_SD Cy5 intensity stdev
CH2_BKD_RAW 3 background (median)
B532 Mean Cy3 background (mean)
CH2_BKD_SD Cy3 background stdev
% > B532+1SD Cy3 background error 1
% > B532+2SD Cy3 background error 2
F532 % Sat. Cy3 percentage of saturated pixels
Ratio of Medians (635/532) Ratio of medians
Ratio of Means (635/532) Ratio of means
Median of Ratios (635/532) Median of ratios
Mean of Ratios (635/532) Mean of ratios
Ratios SD (635/532) Ratio stdev
Rgn Ratio (635/532) Regression ratio
Rgn R? (635/532) Regression ratio squared
F Pixels Foreground pixels
B Pixels Background pixels
Sum of Medians Sum of medians
Sum of Means Sum of means
Log Ratio (635/532) Log ratio Cy5/Cy3 (genepix)
F635 Median - B635 Cy5 background corrected (median)
F532 Median - B532 Cy3 background corrected (median)
F635 Mean - B635 Cy5 background corrected (mean)
F532 Mean - B532 Cy3 background corrected (mean)
Flags Spot quality
VALUE Log2 normalised ratio Cy5/Cy3

Data table
ID_REF X Y Dia. CH1_RAW F635 Mean CH1_SD CH1_BKD_RAW B635 Mean CH1_BKD_SD % > B635+1SD % > B635+2SD F635 % Sat. CH2_RAW F532 Mean CH2_SD CH2_BKD_RAW B532 Mean CH2_BKD_SD % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R? (635/532) F Pixels B Pixels Sum of Medians Sum of Means Log Ratio (635/532) F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 Flags VALUE
1 1720 3770 100 58 61 20 45 46 9 53 40 0 128 141 38 82 83 10 97 87 0 0.283 0.271 0.373 0.32 2.123 0.311 0.386 80 496 59 75 -1.821 13 46 16 59 0 0.046903018
2 1720 3950 100 297 300 55 45 46 9 100 100 0 442 445 61 83 84 11 100 100 0 0.702 0.704 0.696 0.701 1.273 0.695 0.9 80 452 611 617 -0.51 252 359 255 362 0 0.083848932
3 1710 4120 110 61 62 16 44 45 9 67 45 0 137 141 36 83 84 11 97 83 0 0.315 0.31 0.349 0.317 2.444 0.306 0.334 80 527 71 76 -1.667 17 54 18 58 0 0.019010958
4 1720 4310 100 125 136 42 43 45 10 100 100 0 267 276 71 83 83 11 100 100 0 0.446 0.482 0.452 0.468 1.467 0.475 0.8 80 474 266 286 -1.165 82 184 93 193 0 -0.275779248
5 1710 4480 90 61 62 15 45 46 10 65 38 0 159 159 26 82 83 11 100 100 0 0.208 0.221 0.216 0.211 2.271 0.191 0.225 52 371 93 94 -2.265 16 77 17 77 0 -0.708823541
6 1720 4660 100 76 79 21 45 46 9 87 70 0 202 205 50 82 84 13 100 100 0 0.258 0.276 0.308 0.233 2.342 0.247 0.516 80 484 151 157 -1.955 31 120 34 123 0 -0.808399274
7 1710 4840 90 115 119 34 45 45 9 100 98 0 269 277 61 83 84 11 100 100 0 0.376 0.381 0.395 0.362 1.502 0.362 0.765 52 380 256 268 -1.411 70 186 74 194 0 -0.502418646
8 1720 5020 100 177 180 74 46 46 9 97 93 0 316 309 125 83 83 10 100 98 0 0.562 0.593 0.617 0.58 1.647 0.577 0.869 80 504 364 360 -0.831 131 233 134 226 0 -0.060736434
9 1710 5210 90 126 133 46 45 46 10 100 100 0 275 267 78 83 83 11 100 100 0 0.422 0.478 0.47 0.459 1.534 0.476 0.82 52 400 273 272 -1.245 81 192 88 184 0 -0.35748341
10 1710 5390 80 58 58 13 45 46 9 59 32 0 115 118 18 84 84 11 92 69 0 0.419 0.382 0.512 0.405 2.751 0.365 0.21 52 318 44 47 -1.255 13 31 13 34 0 0.796567867
11 1710 5560 110 77 78 21 46 47 10 82 66 0 146 148 33 82 84 14 96 87 0 0.484 0.485 0.525 0.47 2.431 0.458 0.406 80 555 95 98 -1.047 31 64 32 66 0 0.295962164
12 1710 5740 110 138 143 49 45 46 10 100 96 0 251 252 70 81 81 11 100 100 0 0.547 0.573 0.541 0.551 1.595 0.558 0.775 80 540 263 269 -0.87 93 170 98 171 0 0.015983753
13 1720 5930 100 79 79 28 46 46 10 75 68 0 155 157 43 80 81 11 95 91 0 0.44 0.429 0.456 0.443 2.473 0.453 0.464 80 484 108 110 -1.184 33 75 33 77 0 0.068273285
14 1710 6110 90 152 151 44 47 49 17 100 92 0 269 269 66 79 84 31 100 100 0 0.553 0.547 0.516 0.525 1.447 0.522 0.831 52 387 295 294 -0.855 105 190 104 190 0 0.001660519
15 1720 6290 80 61 65 17 46 46 9 67 44 0 126 128 27 80 81 11 90 82 0 0.326 0.396 0.343 0.399 2.65 0.46 0.403 52 340 61 67 -1.617 15 46 19 48 0 0.196559923
16 1720 6470 80 61 63 18 45 46 10 63 38 0 128 130 28 83 83 11 90 76 0 0.356 0.383 0.395 0.385 2.521 0.295 0.186 52 340 61 65 -1.49 16 45 18 47 0 0.303770024
17 1720 6650 60 49 51 11 45 46 11 31 3 0 121 124 28 85 87 25 68 9 0 0.111 0.154 0.348 0.24 3.687 0.148 0.128 32 176 40 45 -3.171 4 36 6 39 0 -0.513880508
18 1720 6830 100 85 89 34 45 46 9 81 67 0 156 169 62 80 81 10 97 91 0 0.526 0.494 0.471 0.452 2.301 0.476 0.668 80 472 116 133 -0.927 40 76 44 89 0 0.26487907
19 1720 7000 100 65 66 24 45 46 9 60 52 0 109 119 36 80 80 10 76 60 0 0.69 0.538 0.58 0.653 2.28 0.569 0.555 80 452 49 60 -0.535 20 29 21 39 -75
20 1720 7180 100 44 46 10 45 46 10 20 2 0 80 81 11 79 80 10 22 2 0 -1 0.5 1 1.202 3.153 0.288 0.004 80 496 0 3 Error -1 1 1 2 -75

Total number of rows: 23040

Table truncated, full table size 3621 Kbytes.




Supplementary data files not provided

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