|
| Status |
Public on May 15, 2019 |
| Title |
PAMPFJ blood 2 |
| Sample type |
genomic |
| |
|
| Source name |
neuroblastoma
|
| Organism |
Homo sapiens |
| Characteristics |
usi: PAMPFJ
tissue: blood
gender: female
cog risk: high
inss stage: 4
mycn status: amp
ploidy: hyperdiploid (>1.0)
ploidy value: 1.24
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted with Qiagen DNA extraction kit protocol
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina HumanHap550 Genotyping BeadChip v1, v3, v3duo, Human610-Quad v1.0 & HumanOmniExpress-12v1 BeadChip protocol
|
| |
|
| Hybridization protocol |
Standard Illumina HumanHap550 Genotyping BeadChip v1, v3, v3duo, Human610-Quad v1.0 & HumanOmniExpress-12v1 BeadChip protocol
|
| Scan protocol |
Standard Illumina HumanHap550 Genotyping BeadChip v1, v3, v3duo, Human610-Quad v1.0 & HumanOmniExpress-12v1 BeadChip protocol
|
| Description |
Genomic DNA extracted from primary neuroblastoma and matched blood samples
|
| Data processing |
IDATS were imported into Illumina's Genome Studio, along with pertinent manifest and cluster files for array versions HumanHap550 v1, v3, v3duo, Human610-Quad v1.0 & HumanOmniExpress-12v1
|
| |
|
| Submission date |
May 14, 2019 |
| Last update date |
May 15, 2019 |
| Contact name |
Gonzalo Lopez |
| Organization name |
Mount Sinai School of Medicine
|
| Department |
Genetics and Genomic Sciences
|
| Street address |
1399 Park avenue
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10016 |
| Country |
USA |
| |
|
| Platform ID |
GPL6433 |
| Series (1) |
| GSE131189 |
Structural variation targets neurodevelopmental genes and identifies SHANK2 as a tumor suppressor in neuroblastoma |
|
