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Sample GSM378151 Query DataSets for GSM378151
Status Public on Mar 06, 2009
Title HCC1937 cell line
Sample type genomic
 
Channel 1
Source name germline DNA from anonymous donor
Organism Homo sapiens
Characteristics tissue: blood
gender: female
Treatment protocol Normal growing conditions.
Growth protocol Grown under subconfluent conditions in growth media (RPMI 1640, pyruvate, 10 mM Hepes, glucose to 4.5g/L, 10% FBS, antibiotics).
Extracted molecule genomic DNA
Extraction protocol Qiagen QiaAmp DNA Micro kit.
Label Cy3
Label protocol Agilent Genomic DNA Labeling kit.
 
Channel 2
Source name HCC1937 cell line
Organism Homo sapiens
Characteristics cell line: HCC1937
Treatment protocol Normal growing conditions.
Growth protocol Grown under subconfluent conditions in growth media (RPMI 1640, pyruvate, 10 mM Hepes, glucose to 4.5g/L, 10% FBS, antibiotics).
Extracted molecule genomic DNA
Extraction protocol Qiagen QiaAmp DNA Micro kit.
Label Cy5
Label protocol Agilent Genomic DNA Labeling kit.
 
 
Hybridization protocol Agilent Direct Method.
Scan protocol Agilent Scan Control Software.
Description HCC1937
Data processing A process control algorithm was used to flag log cgh probe ratios and calculate Z' scores. Z' scores >=2 were used to identify probable copy gains and Z' scores <= -2 were used to identify probable copy loss. Z' scores for the genes of interest are available on the Series record.
 
Submission date Mar 05, 2009
Last update date Dec 26, 2023
Contact name Cynthia Ma
E-mail(s) cynthiaxma@wustl.edu
Phone 3143628903
Organization name Washington University
Department Medical Oncology
Lab Dr. Cynthia Ma Lab
Street address 4515 Mckinley, 4515 Mckinley
City st louis
State/province Missouri
ZIP/Postal code 63627
Country USA
 
Platform ID GPL4091
Series (2)
GSE15131 PIK3CB aCGH Cell Line Results
GSE15134 PI3K inhibition in ER+ breast cancer microarray data

Data table header descriptions
ID_REF
VALUE normalized log10 ratio Cy5/Cy3

Data table
ID_REF VALUE
1 -7.085072853e-002
2 -1.403032099e-001
3 0.000000000e+000
4 9.586124638e-002
5 -2.521621040e-001
6 -1.831648944e-001
7 2.620352154e-001
8 2.951034115e-001
9 2.617243503e-001
10 0.000000000e+000
11 3.405139220e-001
12 -6.144130144e-002
13 -3.649230455e-002
14 -4.804425589e-002
15 3.387784208e-001
16 1.879493821e-002
17 -2.756615330e-002
18 0.000000000e+000
19 -9.372335436e-003
20 7.391421016e-003

Total number of rows: 243430

Table truncated, full table size 5717 Kbytes.




Supplementary file Size Download File type/resource
GSM378151.txt.gz 68.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record
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