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Sample GSM378935 Query DataSets for GSM378935
Status Public on Mar 14, 2009
Title bcl6 in OCI-LY7 replicate1
Sample type genomic
Channel 1
Source name genomic DNA (input)
Organism Homo sapiens
Characteristics type: Input
Extracted molecule genomic DNA
Extraction protocol sonicated genomic DNA, then purify by qiagen column.
Label Cy3
Label protocol described in
Channel 2
Source name chromatinIP products which are genomic regions bound by BCL6
Organism Homo sapiens
Characteristics cell line: DLBCL
type: ChIP
Extracted molecule genomic DNA
Extraction protocol chromatinIP products which are genomic regions bound by BCL6, then purify by qiagen column.
Label Cy5
Label protocol described in
Hybridization protocol described in
Scan protocol described in
Description chip-on-chip is performing in OCI-LY7 DLBCL cell line by BCL6 antibody.
Data processing Take all the probes in the promoter region and do Log2 transformed IP/INPUT(Cy5/Cy3). Then use the maximal summary of three connected probes as the bound intensity of the promoter.
Submission date Mar 10, 2009
Last update date Mar 18, 2009
Contact name weimin ci
Phone 12127467622
Organization name weill cornell college of medicine
Department medicine
Lab ari melnick
Street address 1300 York ave
City new york
State/province NY
ZIP/Postal code 10065
Country USA
Platform ID GPL8275
Series (1)
GSE15179 ChIP-on-chip of BCL6

Data table header descriptions
VALUE Log2 transformed IP/INPUT(CY5/CY3)

Data table
HSAP0406S00000003 -2.264188858
HSAP0406S00000005 2.555427213
HSAP0406S00000008 -2.391532882
HSAP0406S00000009 -1.553276547
HSAP0406S00000010 -1.906514456
HSAP0406S00000011 -0.621878877
HSAP0406S00000012 -1.897143608
HSAP0406S00000013 -1.895783341
HSAP0406S00000014 -0.538562148
HSAP0406S00000015 -2.073033153
HSAP0406S00000016 -1.970885146
HSAP0406S00000017 -1.659704618
HSAP0406S00000018 0.4682614
HSAP0406S00000019 -1.816394142
HSAP0406S00000020 -1.075980722
HSAP0406S00000022 -1.473287214
HSAP0406S00000025 -1.060203713
HSAP0406S00000027 -0.525441879
HSAP0406S00000029 -2.29082188
HSAP0406S00000031 -2.52556354

Total number of rows: 24134

Table truncated, full table size 720 Kbytes.

Supplementary file Size Download File type/resource
GSM378935_ly7_1.532.txt.gz 6.1 Mb (ftp)(http) TXT
GSM378935_ly7_1.635.txt.gz 6.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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