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Sample GSM3824 Query DataSets for GSM3824
Status Public on Jul 05, 2003
Title Treg line SKB from skin graft
Sample type SAGE
Anchor NlaIII
Tag Count 20168
Tag Length 10
 
Source name CD4+ Tr1-like T cell line H-Y specific (resting)
Organism Mus musculus
Extracted molecule total RNA
 
Description A CD4+ Treg/Tr1-like H-Y + H2Ek specific line grown from the accepted male skin grafts of female A1(M) TCR transgenic mice in the presence of anti-CTLA4. mRNA was derived from CD4+ T cells (>99%) 7 days from last stimulation, and contains <0.1% mast cells. cDNA was preamplified (SMART) before SAGE analysis.
 
Submission date Feb 04, 2003
Last update date Nov 19, 2008
Contact name Steve Cobbold
E-mail(s) stephen.cobbold@path.ox.ac.uk
Phone +44-(0)1865-275504
Fax +44-(0)1865-275501
URL http://www.molbiol.ox.ac.uk/pathology/tig/welcome.html
Organization name University of Oxford
Department Sir William Dunn School of Pathology
Lab Therapeutic Immunology Group
Street address South Parks Road
City Oxford
State/province Oxfordshire
ZIP/Postal code OX1 3RE
Country United Kingdom
 
Platform ID GPL11
Series (1)
GSE1316 IL-10-conditioned dendritic cells elicit innate inflammatory gene products in response to danger signals

Data table header descriptions
TAG 10 base pair SAGE Tag
COUNT Absolute count of each Tag in library
TPM tags per million

Data table
TAG COUNT TPM
GTGGCTCACA 402 19932.57
GCGGCGGATG 340 16858.39
CCCTGAGTCC 295 14627.13
CACAAACGGT 251 12445.46
GATACTTGGA 225 11156.29
GATTGAGAAT 173 8577.95
AGGAAGGCGG 158 7834.19
AGGCAGACAG 139 6892.11
AGAGCGAAGT 130 6445.85
ACAACTTCCT 129 6396.27
CAAGGTGACA 129 6396.27
TTGGTGAAGG 125 6197.94
GCCTCCAAGG 108 5355.02
TGACCCCGGG 105 5206.27
CAGAACCCAC 99 4908.77
AGACCGGAAG 95 4710.43
GCTGCCCTCC 94 4660.85
CTGTAGGTGA 83 4115.43
TTCAGCTCGA 83 4115.43
AAAACAGTGG 80 3966.68

Total number of rows: 7387

Table truncated, full table size 138 Kbytes.




Supplementary data files not provided

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