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Status
Public on Mar 20, 2009
Title
SAGE_Brain_astrocytoma_grade_I_B_H1043
Sample type
SAGE
Anchor
NlaIII
Tag Count
75922
Tag Length
10
Source name
brain, pilocytic, bulk, non-normalized, short sage, astrocytoma grade i
Organism
Homo sapiens
Characteristics
organ/tissue: brain tissue preparation: bulk age: 34 sex: male cell type: pilocytic astrocyoma, cerebellum other information: grade one(1) pilocytic astrocytoma
Biomaterial provider
Duke Brain Tumor Bank
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 50 Tagging_enzyme: BsmF I Old_library_name: SAGE_Duke_H1043 Library_producer: Deric Olschner Laboratory: Gregory Riggins, Duke University Medical Center
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL4
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309
Cancer Genome Anatomy Project (CGAP) Human SAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
76
1001.03
AAAAAAAAAG
1
13.17
AAAAAAAAAT
1
13.17
AAAAAAAAGT
1
13.17
AAAAAAAATA
1
13.17
AAAAAAAGGG
1
13.17
AAAAAAATCA
2
26.34
AAAAAAATTT
1
13.17
AAAAAACAAA
1
13.17
AAAAAACAAT
1
13.17
AAAAAACAGC
1
13.17
AAAAAACGCC
1
13.17
AAAAAACTCC
7
92.20
AAAAAACTGA
1
13.17
AAAAAAGCCG
1
13.17
AAAAAAGGAG
1
13.17
AAAAAAGGGA
1
13.17
AAAAAAGTAA
1
13.17
AAAAAATAAA
1
13.17
AAAAAATAGA
1
13.17
Total number of rows: 30880 Table truncated, full table size 575 Kbytes .Supplementary data files not provided