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Sample GSM383719 Query DataSets for GSM383719
Status Public on Mar 20, 2009
Title SAGE_Brain_fetal_normal_B_S1
Sample type SAGE
Anchor NlaIII
Tag Count 305546
Tag Length 10
 
Source name brain, normal, bulk, fetus, extracted short SAGE
Organism Homo sapiens
Characteristics organ/tissue: brain
tissue preparation: bulk
age: Spontaneously aborted male/female Caucasian fetuses, ages 20-33 weeks
sex: unknown
other information: Short tags are extracted from Long SAGE data
Biomaterial provider Clonetech Laboratories
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 430
Tagging_enzyme: Mme I
Library_producer: Brad St. Croix
Laboratory: Molecular Genetics Lab at Johns Hopkins Oncology Center
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 294 962.21
AAAAAAAAAG 2 6.55
AAAAAAAAAT 1 3.27
AAAAAAAACA 2 6.55
AAAAAAAACC 1 3.27
AAAAAAAACT 1 3.27
AAAAAAAAGA 5 16.36
AAAAAAAAGC 1 3.27
AAAAAAAAGG 1 3.27
AAAAAAAATA 1 3.27
AAAAAAAATT 1 3.27
AAAAAAACAA 1 3.27
AAAAAAACAG 33 108.00
AAAAAAACCA 2 6.55
AAAAAAACTC 2 6.55
AAAAAAAGAA 1 3.27
AAAAAAAGCA 4 13.09
AAAAAAAGTG 1 3.27
AAAAAAATAA 3 9.82
AAAAAAATAG 3 9.82

Total number of rows: 79405

Table truncated, full table size 1415 Kbytes.




Supplementary data files not provided

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