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Sample GSM383725 Query DataSets for GSM383725
Status Public on Mar 20, 2009
Title SAGE_Brain_glioblastoma_B_H833
Sample type SAGE
Anchor NlaIII
Tag Count 100600
Tag Length 10
 
Source name brain, glioblastoma multiforme, bulk, short sage, adult, male
Organism Homo sapiens
Characteristics organ/tissue: brain
tissue preparation: bulk
age: 78 yrs
sex: male
cell type: Glioblastoma
Biomaterial provider Duke Tissue Bank
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 356
Tagging_enzyme: BsmF I
Library_producer: Jennfier B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 104 1033.80
AAAAAAAAAT 2 19.88
AAAAAAAAGA 3 29.82
AAAAAAAATC 1 9.94
AAAAAAAATG 2 19.88
AAAAAAAGCT 1 9.94
AAAAAAAGGA 1 9.94
AAAAAAATAA 1 9.94
AAAAAAATCA 5 49.70
AAAAAAATTA 1 9.94
AAAAAACAAA 1 9.94
AAAAAACAGC 1 9.94
AAAAAACCCA 17 168.99
AAAAAACTAC 2 19.88
AAAAAACTCA 1 9.94
AAAAAACTCC 1 9.94
AAAAAACTGC 1 9.94
AAAAAAGAAA 1 9.94
AAAAAAGACA 1 9.94
AAAAAAGAGA 2 19.88

Total number of rows: 34143

Table truncated, full table size 612 Kbytes.




Supplementary data files not provided

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