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| Status |
Public on Mar 20, 2009 |
| Title |
SAGE_Brain_meningioma_grade_II_B_SF2176 |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
48711 |
| Tag Length |
10 |
| |
|
| Source name |
brain, meningioma, grade ii, malignant, bulk, short sage
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: brain
tissue preparation: bulk
sex: unknown
cell type: atypical meningioma
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| Biomaterial provider |
Brain Tumor Tissue Bank, University of California, San Francisco
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
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| |
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| Description |
CGAP_Numeric_library_ID: 528
Tagging_enzyme: BsmF I
Library_producer: Anita Lal
Laboratory: Meningioma Research Laboratory, UCSF
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
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| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
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| Department |
Cancer Genome Anatomy Project
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| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
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| Platform ID |
GPL4 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
5 |
102.65 |
| AAAAAAAAGA |
1 |
20.53 |
| AAAAAAAAGC |
2 |
41.06 |
| AAAAAAAATG |
1 |
20.53 |
| AAAAAAACAA |
1 |
20.53 |
| AAAAAAACCT |
1 |
20.53 |
| AAAAAAAGCA |
1 |
20.53 |
| AAAAAACAGA |
1 |
20.53 |
| AAAAAACCCA |
7 |
143.70 |
| AAAAAACTCC |
4 |
82.12 |
| AAAAAAGTTC |
1 |
20.53 |
| AAAAAATCCC |
1 |
20.53 |
| AAAAACCATA |
4 |
82.12 |
| AAAAACCCAA |
1 |
20.53 |
| AAAAACCCTT |
1 |
20.53 |
| AAAAAGCACA |
1 |
20.53 |
| AAAAAGCAGA |
7 |
143.70 |
| AAAAAGTTCC |
1 |
20.53 |
| AAAAATAAAG |
39 |
800.64 |
| AAAAATAAGG |
1 |
20.53 |
Total number of rows: 16920
Table truncated, full table size 316 Kbytes.
| Supplementary data files not provided |
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