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| Status |
Public on Mar 20, 2009 |
| Title |
SAGE_Breast_carcinoma_B_IDC-4 |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
64095 |
| Tag Length |
10 |
| |
|
| Source name |
mammary gland, ductal, invasive, high grade, carcinoma, non-normalized, short SAGE, bulk
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: mammary gland
tissue preparation: bulk
sex: female
cell type: breast carcinoma
other information: Breast, invasive ductal carcinoma, high-grade, ERneg, erbB2neg., lymph node neg., p53pos.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
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| |
|
| Description |
CGAP_Numeric_library_ID: 174
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
|
| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
|
| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
|
| Platform ID |
GPL4 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
135 |
2106.25 |
| AAAAAAAAAG |
1 |
15.60 |
| AAAAAAAAAT |
1 |
15.60 |
| AAAAAAAAGA |
1 |
15.60 |
| AAAAAAAAGG |
1 |
15.60 |
| AAAAAAAGAA |
1 |
15.60 |
| AAAAAAAGAC |
1 |
15.60 |
| AAAAAAAGGC |
1 |
15.60 |
| AAAAAAAGGT |
2 |
31.20 |
| AAAAAAATCA |
1 |
15.60 |
| AAAAAACAAC |
1 |
15.60 |
| AAAAAACATT |
2 |
31.20 |
| AAAAAACCCA |
35 |
546.06 |
| AAAAAACTAC |
1 |
15.60 |
| AAAAAACTCC |
1 |
15.60 |
| AAAAAACTGG |
1 |
15.60 |
| AAAAAAGAAA |
2 |
31.20 |
| AAAAAAGGAG |
1 |
15.60 |
| AAAAAATAAA |
1 |
15.60 |
| AAAAAATACA |
5 |
78.01 |
Total number of rows: 21531
Table truncated, full table size 401 Kbytes.
| Supplementary data files not provided |
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