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Sample GSM383798 Query DataSets for GSM383798
Status Public on Mar 20, 2009
Title SAGE_Breast_carcinoma_CL_MCF7control_0h
Sample type SAGE
Anchor NlaIII
Tag Count 59877
Tag Length 10
 
Source name mammary gland, carcinoma, cell line, non-normalized, short SAGE, SAGE
Organism Homo sapiens
Characteristics organ/tissue: mammary gland
tissue preparation: cell line
sex: female
cell type: carcinoma
other information: Estrogen receptor positive MCF7 cells were grown in conditions devoid of estrogen for 48h (i.e. IMEM media supplemented with 10% Charcoal Stripped Serum). This SAGE library represents the 0h time point (i.e. baseline, untreated cells) of an estrogen exposure time course experiment.
Biomaterial provider American Tissue Type Collection
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 77
Tagging_enzyme: BsmF I
Old_library_name: SAGE_SciencePark_MCF7_Control_0h
Laboratory: Marcelo Aldaz, M.D. Anderson Cancer Center
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 238 3974.82
AAAAAAAAAC 6 100.21
AAAAAAAAAG 1 16.70
AAAAAAAAAT 3 50.10
AAAAAAAACA 2 33.40
AAAAAAAAGA 3 50.10
AAAAAAAAGG 1 16.70
AAAAAAAATC 1 16.70
AAAAAAACAA 1 16.70
AAAAAAACTG 1 16.70
AAAAAAAGAA 2 33.40
AAAAAAAGGA 1 16.70
AAAAAAATAA 1 16.70
AAAAAAATAG 1 16.70
AAAAAAATGA 1 16.70
AAAAAACATT 1 16.70
AAAAAACCAA 1 16.70
AAAAAACCCA 23 384.12
AAAAAAGAAA 1 16.70
AAAAAAGAAG 3 50.10

Total number of rows: 15401

Table truncated, full table size 288 Kbytes.




Supplementary data files not provided

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