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Sample GSM383804 Query DataSets for GSM383804
Status Public on Mar 20, 2009
Title SAGE_Breast_carcinoma_CL_ZR75_1_estrogen
Sample type SAGE
Anchor NlaIII
Tag Count 38797
Tag Length 10
 
Source name mammary gland, carcinoma, cell line, non-normalized, short SAGE, SAGE
Organism Homo sapiens
Characteristics organ/tissue: mammary gland
tissue preparation: cell line
sex: female
cell type: breast carcinoma cell line
other information: ZR75-1 estrogen receptor positive, estrogen dependent human breast cancer cell line, estrogen deprived for a week, cells were collected 16 hours following addition of fresh medium containing 10 nM estrogen.
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 176
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute
References: P. Seth et al., Oncogene 21, 836-43 (2002) [PUBMED=11850811]
 
Submission date Mar 19, 2009
Last update date Mar 12, 2012
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT

Data table
TAG COUNT
AAAAAAAAAA 350
AAAAAAAAAC 5
AAAAAAAAAG 4
AAAAAAAAAT 2
AAAAAAAAGA 3
AAAAAACCCA 39
AAAAAACTCC 3
AAAAACCATA 5
AAAAACCCTT 2
AAAAAGAAAA 2
AAAAAGCAGA 2
AAAAATAAAG 6
AAAACAAAAA 2
AAAACATTAA 3
AAAACATTAT 2
AAAACATTCT 30
AAAACCTGAA 3
AAAACCTGTA 2
AAAACTACCG 2
AAAACTGAGA 2

Total number of rows: 4282

Table truncated, full table size 55 Kbytes.




Supplementary data files not provided

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