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Sample GSM383861

Query DataSets for GSM383861

Status

Public on Mar 20, 2009

Title

SAGE_Colon_adenocarcinoma_CL_Caco2

Sample type

SAGE

Anchor

NlaIII

Tag Count

60682

Tag Length

Source name

adenocarcinoma, colon, non-normalized, short SAGE, cell line

Organism

Homo sapiens

Characteristics

organ/tissue: colon
tissue preparation: cell line
sex: male
cell type: adenocarcinoma
mutations: RER- (replication error negitive cell line), has normal mismatch repair
other information: Colon, colorectal carcinoma cell line (RER-), ATCC: HTB-37.

Biomaterial provider

J. Fogh

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 2
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Caco_2
Library_producer: Lin Zhang
Laboratory: Ken Kinzler and Bert Vogelstein, Johns Hopkins Medical Institute
References: L. Zhang et al., Science 276, 1268-1272 (1997) [PUBMED=9157888]

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	173	2850.93
AAAAAAAAAG	1	16.48
AAAAAAAAAT	1	16.48
AAAAAAAATA	2	32.96
AAAAAAACAA	1	16.48
AAAAAAACTA	2	32.96
AAAAAAATAA	1	16.48
AAAAAAATGC	1	16.48
AAAAAACAGA	1	16.48
AAAAAACCCA	2	32.96
AAAAAACTCC	9	148.31
AAAAAAGAAA	2	32.96
AAAAAAGCCG	1	16.48
AAAAAATAAT	1	16.48
AAAAAATACA	1	16.48
AAAAACAAAA	1	16.48
AAAAACAAGG	2	32.96
AAAAACATTA	1	16.48
AAAAACCAAA	1	16.48
AAAAACCATA	2	32.96

Total number of rows: 23111

Table truncated, full table size 430 Kbytes.

Supplementary data files not provided