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Sample GSM383954 Query DataSets for GSM383954
Status Public on Mar 20, 2009
Title SAGE_Prostate_carcinoma_CL_LNCaP_no-DHT
Sample type SAGE
Anchor NlaIII
Tag Count 62160
Tag Length 10
 
Source name prostate, carcinoma, cell line, short SAGE, SAGE, non-normalized
Organism Homo sapiens
Characteristics organ/tissue: prostate
tissue preparation: cell line
sex: male
cell type: carcinoma
other information: LNCaP cells were cultured in the absence of androgens for 3 months.
Biomaterial provider LNCaP cells from ATCC
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 58
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Chen_LNCaP_no-DHT
Laboratory: YQ Chen, Wayne State University
References: A. Waghray et al., Proteomics 1, 1327-38 (2001) [PUBMED=11721644]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 40 643.50
AAAAAAACAG 1 16.09
AAAAAACCCA 1 16.09
AAAAAACTCC 2 32.18
AAAAAATGAA 1 16.09
AAAAAATGCT 1 16.09
AAAAAATTTG 1 16.09
AAAAACATTC 1 16.09
AAAAACCATA 4 64.35
AAAAACTACC 1 16.09
AAAAACTGCC 1 16.09
AAAAAGATAA 4 64.35
AAAAAGCAGA 19 305.66
AAAAAGGCCC 1 16.09
AAAAATAAAA 1 16.09
AAAAATAAAG 16 257.40
AAAAATAAAT 2 32.18
AAAAATCCTA 1 16.09
AAAAATGGTT 1 16.09
AAAAATGTAT 1 16.09

Total number of rows: 16768

Table truncated, full table size 313 Kbytes.




Supplementary data files not provided
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