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Status
Public on Mar 20, 2009
Title
LSAGE_Foreskin_normal_B_hs0305
Sample type
SAGE
Anchor
NlaIII
Tag Count
3940350
Tag Length
17
Source name
skin, normal, bulk, long sage, slx-sage, solexa sage, male, foreskin, baby
Organism
Homo sapiens
Characteristics
organ/tissue: skin tissue preparation: bulk age: 9 months old baby sex: male cell type: foreskin other information: SLX-SAGE
Biomaterial provider
Laurence Baskin, University of California, San Francisco
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 2285 Tagging_enzyme: Mme I Library_producer: Martin Hirst, Functional Genomics Lab Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL1485
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314
Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAAAAAAAAA
4750
1205.48
AAAAAAAAAAAAAAAAC
248
62.94
AAAAAAAAAAAAAAAAG
149
37.81
AAAAAAAAAAAAAAAAT
378
95.93
AAAAAAAAAAAAAAACA
32
8.12
AAAAAAAAAAAAAAACC
16
4.06
AAAAAAAAAAAAAAACT
7
1.78
AAAAAAAAAAAAAAAGA
49
12.44
AAAAAAAAAAAAAAAGC
19
4.82
AAAAAAAAAAAAAAAGG
25
6.34
AAAAAAAAAAAAAAAGT
12
3.05
AAAAAAAAAAAAAAATA
44
11.17
AAAAAAAAAAAAAAATC
47
11.93
AAAAAAAAAAAAAAATG
18
4.57
AAAAAAAAAAAAAAATT
12
3.05
AAAAAAAAAAAAAACAA
22
5.58
AAAAAAAAAAAAAACAC
4
1.02
AAAAAAAAAAAAAACAG
2
0.51
AAAAAAAAAAAAAACAT
4
1.02
AAAAAAAAAAAAAACTA
2
0.51
Total number of rows: 267732 Table truncated, full table size 6575 Kbytes .Supplementary data files not provided