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Sample GSM384140 Query DataSets for GSM384140
Status Public on Mar 20, 2009
Title LSAGE_Skin_Normal_B_hs0282
Sample type SAGE
Anchor NlaIII
Tag Count 4411636
Tag Length 17
 
Source name skin, normal, bulk, long sage, slx-sage, solexa sage, female, seborrheic keratosis
Organism Homo sapiens
Characteristics organ/tissue: skin
tissue preparation: bulk
sex: female
cell type: Seborrheic Keratosis
other information: SLX-SAGE
Biomaterial provider Youwen Zhou Lab
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 2313
Tagging_enzyme: Mme I
Library_producer: Martin Hirst, Functional Genomics Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314 Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 103250 23404.02
AAAAAAAAAAAAAAAAC 1003 227.35
AAAAAAAAAAAAAAAAG 204 46.24
AAAAAAAAAAAAAAAAT 229 51.91
AAAAAAAAAAAAAAACA 702 159.12
AAAAAAAAAAAAAAACC 121 27.43
AAAAAAAAAAAAAAACT 18 4.08
AAAAAAAAAAAAAAAGA 168 38.08
AAAAAAAAAAAAAAAGC 27 6.12
AAAAAAAAAAAAAAAGG 20 4.53
AAAAAAAAAAAAAAAGT 10 2.27
AAAAAAAAAAAAAAATA 82 18.59
AAAAAAAAAAAAAAATC 50 11.33
AAAAAAAAAAAAAAATG 7 1.59
AAAAAAAAAAAAAAATT 10 2.27
AAAAAAAAAAAAAACAA 571 129.43
AAAAAAAAAAAAAACAC 106 24.03
AAAAAAAAAAAAAACAG 19 4.31
AAAAAAAAAAAAAACAT 7 1.59
AAAAAAAAAAAAAACCA 71 16.09

Total number of rows: 59394

Table truncated, full table size 1488 Kbytes.




Supplementary data files not provided

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