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Sample GSM384146 Query DataSets for GSM384146
Status Public on Mar 20, 2009
Title LSAGE_Uterus_normal_B_hs0195
Sample type SAGE
Anchor NlaIII
Tag Count 3718463
Tag Length 17
 
Source name uterus, normal, bulk, long sage, slx-sage, solexa sage, female
Organism Homo sapiens
Characteristics organ/tissue: uterus
tissue preparation: bulk
sex: female
other information: SLX-SAGE
Biomaterial provider Dianne Miller, British Columbia Cancer Agency
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 2243
Tagging_enzyme: Mme I
Library_producer: Martin Hirst, Functional Genomics Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314 Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 1456 391.56
AAAAAAAAAAAAAAAAC 97 26.09
AAAAAAAAAAAAAAAAG 21 5.65
AAAAAAAAAAAAAAAAT 142 38.19
AAAAAAAAAAAAAAACA 27 7.26
AAAAAAAAAAAAAAACC 7 1.88
AAAAAAAAAAAAAAACT 5 1.34
AAAAAAAAAAAAAAAGA 3 0.81
AAAAAAAAAAAAAAAGC 2 0.54
AAAAAAAAAAAAAAAGT 2 0.54
AAAAAAAAAAAAAAATA 12 3.23
AAAAAAAAAAAAAAATC 25 6.72
AAAAAAAAAAAAAAATG 2 0.54
AAAAAAAAAAAAAAATT 7 1.88
AAAAAAAAAAAAAACAA 11 2.96
AAAAAAAAAAAAAACAC 5 1.34
AAAAAAAAAAAAAACCC 3 0.81
AAAAAAAAAAAAAACTC 2 0.54
AAAAAAAAAAAAAAGAA 4 1.08
AAAAAAAAAAAAAAGAT 3 0.81

Total number of rows: 305922

Table truncated, full table size 7516 Kbytes.




Supplementary data files not provided

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