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Sample GSM384243 Query DataSets for GSM384243
Status Public on Mar 20, 2009
Title mSAGE_Cerebellum_CS_GCPcontrol
Sample type SAGE
Anchor NlaIII
Tag Count 87344
Tag Length 10
 
Source name cerebellum, normal, short term culture, short sage, 8 days post natal, granule cell, progenitor
Organism Mus musculus
Characteristics organ/tissue: cerebellum
tissue preparation: short term culture
age: postnatal day 8
sex: unknown
cell type: normal cerebellar granule cell precursors
mutations: none
other information: Mouse primary granule cell precursors, isolated on postnatal day 8 and cultured for 18 hours in serum-free medium. Matched control for mSAGE_Cerebellum_CP_GCP+SHH (sonic hedgehog treated precursor cells).
Biomaterial provider Robert Wechsler-Reya, Stanford
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 903
Library_producer: Christopher Turner
Laboratory: Riggins Laboratory Duke
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 179 2049.37
AAAAAAAAAC 1 11.45
AAAAAAAAAG 1 11.45
AAAAAAAAAT 3 34.35
AAAAAAAAGA 2 22.90
AAAAAAAAGT 1 11.45
AAAAAAAATA 1 11.45
AAAAAAAATG 1 11.45
AAAAAAACTA 7 80.14
AAAAAAAGAA 1 11.45
AAAAAAAGTC 1 11.45
AAAAAAATAA 2 22.90
AAAAAAATAG 8 91.59
AAAAAAATTA 1 11.45
AAAAAACTAC 1 11.45
AAAAAAGAAA 2 22.90
AAAAAAGCTT 1 11.45
AAAAAAGGAG 1 11.45
AAAAAAGGGG 1 11.45
AAAAAAGGTA 1 11.45

Total number of rows: 25937

Table truncated, full table size 484 Kbytes.




Supplementary data files not provided

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