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Sample GSM384596 Query DataSets for GSM384596
Status Public on Mar 20, 2009
Title mLSAGE_Pancreas_normal_TS21_MMD_SM225
Sample type SAGE
Anchor NlaIII
Tag Count 83740
Tag Length 17
 
Source name pancreas, normal, mocroscope dissected, e13.5, ts21, long sage
Organism Mus musculus
Characteristics organ/tissue: pancreas
tissue preparation: other
age: E13.5
sex: unknown
cell type: normal
mutations: NGN3 GFP+
Biomaterial provider Cheryl Helgason
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2065
Library_producer: Gene Expresion Lab, GSC
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1349
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15312 Cancer Genome Anatomy Project (CGAP) Mouse LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 93 1110.58
AAAAAAAAAAAAAAAAC 1 11.94
AAAAAAAAAAAAAAAAG 8 95.53
AAAAAAAAAAAAAAAAT 2 23.88
AAAAAAAAAAAAAAACA 2 23.88
AAAAAAAAAATAAAAAA 1 11.94
AAAAAAAAAGAAAAAAA 1 11.94
AAAAAAAAATGGGTTCA 1 11.94
AAAAAAAACTAGCAAAT 1 11.94
AAAAAAAACTTTGCTGC 1 11.94
AAAAAAAATAAAAATCC 1 11.94
AAAAAAAATTATGCCAG 1 11.94
AAAAAAAATTGGAAAAG 1 11.94
AAAAAAAATTTTTTTAT 1 11.94
AAAAAAAGAAATAGAGG 1 11.94
AAAAAAATAAAAATCCC 4 47.77
AAAAAAGAGCGCAGTTA 1 11.94
AAAAAAGTACCAGAGCT 1 11.94
AAAAAAGTTAATTCTAT 1 11.94
AAAAAATAAATTTCTCA 3 35.83

Total number of rows: 31245

Table truncated, full table size 795 Kbytes.




Supplementary data files not provided

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