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Sample GSM384654 Query DataSets for GSM384654
Status Public on Mar 20, 2009
Title mLSAGE_Vascular_endothelium_SW620_tumor_associated_AP_SW620TEC
Sample type SAGE
Anchor NlaIII
Tag Count 112035
Tag Length 17
 
Source name vascular, tumor associated, endothelium, antibody purified, long sage, adult
Organism Mus musculus
Characteristics organ/tissue: vascular
tissue preparation: antibody purified
sex: unknown
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2229
Library_producer: Brad St. Croix
Laboratory: Brad St. Croix, National Cancer Institute, Tumor Angiogenesis Section
References: Seaman S et al. Cancer Cell. 2007 Jun;11(6):539-54 [PUBMED=17560335]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1349
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15312 Cancer Genome Anatomy Project (CGAP) Mouse LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 32 285.63
AAAAAAAAAAAAAAAAC 1 8.93
AAAAAAAAAAAAAAAAG 1 8.93
AAAAAAAAAAAAAAAAT 2 17.85
AAAAAAAAAAAACTTGA 1 8.93
AAAAAAAAAAAGAGAAA 1 8.93
AAAAAAAAAAATCCCAC 1 8.93
AAAAAAAAAAGAAAGAG 1 8.93
AAAAAAAAAATGGCTAA 1 8.93
AAAAAAAAAATGGGTTC 1 8.93
AAAAAAAAATGGGTTCA 30 267.77
AAAAAAAATCTAATCAA 1 8.93
AAAAAAAATGGGTTCAC 1 8.93
AAAAAAAATGGGTTCAG 1 8.93
AAAAAAAATTGGGTTCA 1 8.93
AAAAAAACCCCAAACCC 1 8.93
AAAAAAACTAGCAAATG 1 8.93
AAAAAAATAAAAATCCC 1 8.93
AAAAAAATAAATTTCTC 1 8.93
AAAAAACACATTTTATT 1 8.93

Total number of rows: 42375

Table truncated, full table size 1047 Kbytes.




Supplementary data files not provided

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