NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM38636 Query DataSets for GSM38636
Status Public on Aug 26, 2005
Title Expression data of colon cancer 318A
Sample type RNA
 
Source name Patient ID318-A
Organism Homo sapiens
Characteristics patient id: 318
age (years): 76
sex: Female
msi status: Positive
mlh1 methylation: Yes
braf gene: Mutant
kras2 gene: Wild
tumor site: Proximal
dukes stage: B
pathology: Well
axin2 methylation: Yes
Extracted molecule total RNA
Extraction protocol mRNA was amplified from the specimens and was used to prepare biotin-labeled cRNA for hybridization.
 
Description Characteristics definitions: Well=well-differentiated adenocarcinoma; Mod=moderately differentiated adenocarcinoma; Sig=signet ring cell adenocarcinoma; Muc=mucinous adenocarcinoma. Methylation of AXIN2 promoter region was determined by COBRA method.
 
Submission date Jan 08, 2005
Last update date May 22, 2009
Contact name Hiroyuki Mano
E-mail(s) hmano@jichi.ac.jp
Phone +81-285-58-7449
Fax +81-285-44-7322
Organization name Jichi Medical University
Department Division of Functional Genomics
Street address 3311-1 Yakushiji
City Shimotsukeshi
State/province Tochigi
ZIP/Postal code 329-0498
Country Japan
 
Platform ID GPL96
Series (1)
GSE2138 Colon cancer profiling

Data table header descriptions
ID_REF
VALUE Expression intensities
ABS_CALL Present call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 52.1 P
AFFX-BioB-M_at 102.7 P
AFFX-BioB-3_at 53.6 P
AFFX-BioC-5_at 138.7 P
AFFX-BioC-3_at 106.1 P
AFFX-BioDn-5_at 116.3 P
AFFX-BioDn-3_at 698 P
AFFX-CreX-5_at 1074.4 P
AFFX-CreX-3_at 1646.6 P
AFFX-DapX-5_at 0.6 A
AFFX-DapX-M_at 5.6 A
AFFX-DapX-3_at 0.5 A
AFFX-LysX-5_at 6.9 A
AFFX-LysX-M_at 1.1 A
AFFX-LysX-3_at 0.8 A
AFFX-PheX-5_at 1.2 A
AFFX-PheX-M_at 0.5 A
AFFX-PheX-3_at 2.2 A
AFFX-ThrX-5_at 2.2 A
AFFX-ThrX-M_at 0.7 A

Total number of rows: 22283

Table truncated, full table size 380 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap