NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM38641 Query DataSets for GSM38641
Status Public on Aug 26, 2005
Title Expression data of colon cancer 413B
Sample type RNA
 
Source name Patient ID413-B
Organism Homo sapiens
Characteristics patient id: 413
age (years): 69
sex: Female
msi status: Positive
mlh1 methylation: Yes
braf gene: Mutant
kras2 gene: Wild
tumor site: Proximal
dukes stage: A
pathology: Well
axin2 methylation: No
Extracted molecule total RNA
Extraction protocol mRNA was amplified from the specimens and was used to prepare biotin-labeled cRNA for hybridization.
 
Description Characteristics definitions: Well=well-differentiated adenocarcinoma; Mod=moderately differentiated adenocarcinoma; Sig=signet ring cell adenocarcinoma; Muc=mucinous adenocarcinoma. Methylation of AXIN2 promoter region was determined by COBRA method.
 
Submission date Jan 08, 2005
Last update date May 22, 2009
Contact name Hiroyuki Mano
E-mail(s) hmano@jichi.ac.jp
Phone +81-285-58-7449
Fax +81-285-44-7322
Organization name Jichi Medical University
Department Division of Functional Genomics
Street address 3311-1 Yakushiji
City Shimotsukeshi
State/province Tochigi
ZIP/Postal code 329-0498
Country Japan
 
Platform ID GPL97
Series (1)
GSE2138 Colon cancer profiling

Data table header descriptions
ID_REF
VALUE Expression intensities
ABS_CALL Present call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 37.2 P
AFFX-BioB-M_at 77.7 P
AFFX-BioB-3_at 38 P
AFFX-BioC-5_at 95.2 P
AFFX-BioC-3_at 77.6 P
AFFX-BioDn-5_at 58.7 P
AFFX-BioDn-3_at 366.7 P
AFFX-CreX-5_at 834.2 P
AFFX-CreX-3_at 1207.2 P
AFFX-DapX-5_at 0.8 A
AFFX-DapX-M_at 0.8 A
AFFX-DapX-3_at 0.7 A
AFFX-LysX-5_at 8.9 A
AFFX-LysX-M_at 3.5 A
AFFX-LysX-3_at 0.4 A
AFFX-PheX-5_at 0.8 A
AFFX-PheX-M_at 0.8 A
AFFX-PheX-3_at 5.4 A
AFFX-ThrX-5_at 1.8 A
AFFX-ThrX-M_at 0.5 A

Total number of rows: 22645

Table truncated, full table size 367 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap