|
Status |
Public on Jul 20, 2010 |
Title |
D4.12h + 8h_CD3/CD28 |
Sample type |
RNA |
|
|
Source name |
buffy coats of peripheral blood
|
Organism |
Homo sapiens |
Characteristics |
cell type: CD4+ T cells
|
Treatment protocol |
CD4+ T cells were serum-deprived for 12 hours followed by 8 hours incubation with the indicated compounds
|
Growth protocol |
freshly isolated CD4+ T cells
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with NanoDrop ThermoScientific.
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
|
|
Hybridization protocol |
Standard Illumina hybridization protocol
|
Scan protocol |
Standard Illumina scanning protocol
|
Description |
treatment 4
|
Data processing |
The data were normalised using quantile normalisation in R
|
|
|
Submission date |
Mar 31, 2009 |
Last update date |
Jan 23, 2013 |
Contact name |
Joachim Schultze |
E-mail(s) |
j.schultze@uni-bonn.de
|
Organization name |
LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
|
Department |
Genomics and Immunoregulation
|
Street address |
Carl-Troll-Strasse 31
|
City |
Bonn |
State/province |
NRW |
ZIP/Postal code |
53115 |
Country |
Germany |
|
|
Platform ID |
GPL2507 |
Series (1) |
GSE15468 |
Application of blood transcriptomics to identify three novel biomarkers for monitoring anti-TGFbeta therapy |
|