|
| Status |
Public on Jul 20, 2010 |
| Title |
D1.12h + 8h_10ng/mlTGF |
| Sample type |
RNA |
| |
|
| Source name |
buffy coats of peripheral blood
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: CD4+ T cells
|
| Treatment protocol |
CD4+ T cells were serum-deprived for 12 hours followed by 8 hours incubation with the indicated compounds
|
| Growth protocol |
freshly isolated CD4+ T cells
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with NanoDrop ThermoScientific.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
treatment 2
|
| Data processing |
The data were normalised using quantile normalisation in R
|
| |
|
| Submission date |
Mar 31, 2009 |
| Last update date |
Jan 23, 2013 |
| Contact name |
Joachim Schultze |
| E-mail(s) |
j.schultze@uni-bonn.de
|
| Organization name |
LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
|
| Department |
Genomics and Immunoregulation
|
| Street address |
Carl-Troll-Strasse 31
|
| City |
Bonn |
| State/province |
NRW |
| ZIP/Postal code |
53115 |
| Country |
Germany |
| |
|
| Platform ID |
GPL2507 |
| Series (1) |
| GSE15468 |
Application of blood transcriptomics to identify three novel biomarkers for monitoring anti-TGFbeta therapy |
|
