|
Status |
Public on Jun 19, 2019 |
Title |
ADSCD7P3 |
Sample type |
SRA |
|
|
Source name |
adipose-derived mesenchymal stem cells
|
Organism |
Homo sapiens |
Characteristics |
disease diagnosis: Lymphedema cell type: Adipose-derived mesenchymal stem cells sampling position: Normal upper abdomen patient: ADSCD7
|
Extracted molecule |
total RNA |
Extraction protocol |
Total cellular RNA was extracted using a miRNeasy Mini Kit (217004, Qiagen) according to the manufacturer’s instructions. Library construction was performed by using a NEBNext Ultra RNA library Prep Kit for Illumina (#E7530L, NEB).
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|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
HiSeq X Ten |
|
|
Description |
Normal upper abdomen of lymphedema patient. PolyA RNA mRNA-seq
|
Data processing |
The expression of the transcripts was quantified with kallisto v0.43.1 under default settings. Genome_build: GRCh37 Supplementary_files_format_and_content: *tsv: Tab-delimited text files include TPM values for each sample.
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|
|
Submission date |
Jun 18, 2019 |
Last update date |
Jun 19, 2019 |
Contact name |
Zhou Zhou |
E-mail(s) |
zhouzhoufuwai@126.com
|
Organization name |
Fuwai Hospital, the Chinese Academy of Medical Sciences
|
Street address |
Beilishi Street 167, Xi Cheng District
|
City |
Beijing |
ZIP/Postal code |
100037 |
Country |
China |
|
|
Platform ID |
GPL20795 |
Series (1) |
GSE132936 |
Transcriptome Analysis and Functional Identification of Adipose-Derived Mesenchymal Stem Cells in Secondary Lymphedema |
|
Relations |
BioSample |
SAMN12087459 |
SRA |
SRX6088956 |