|
| Status |
Public on Jun 19, 2019 |
| Title |
ADSCD8P3 |
| Sample type |
SRA |
| |
|
| Source name |
adipose-derived mesenchymal stem cells
|
| Organism |
Homo sapiens |
| Characteristics |
disease diagnosis: Lymphedema
cell type: Adipose-derived mesenchymal stem cells
sampling position: Normal upper abdomen
patient: ADSCD8
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total cellular RNA was extracted using a miRNeasy Mini Kit (217004, Qiagen) according to the manufacturer’s instructions.
Library construction was performed by using a NEBNext Ultra RNA library Prep Kit for Illumina (#E7530L, NEB).
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
HiSeq X Ten |
| |
|
| Description |
Normal upper abdomen of lymphedema patient.
PolyA RNA
mRNA-seq
|
| Data processing |
The expression of the transcripts was quantified with kallisto v0.43.1 under default settings.
Genome_build: GRCh37
Supplementary_files_format_and_content: *tsv: Tab-delimited text files include TPM values for each sample.
|
| |
|
| Submission date |
Jun 18, 2019 |
| Last update date |
Jun 19, 2019 |
| Contact name |
Zhou Zhou |
| E-mail(s) |
zhouzhoufuwai@126.com
|
| Organization name |
Fuwai Hospital, the Chinese Academy of Medical Sciences
|
| Street address |
Beilishi Street 167, Xi Cheng District
|
| City |
Beijing |
| ZIP/Postal code |
100037 |
| Country |
China |
| |
|
| Platform ID |
GPL20795 |
| Series (1) |
| GSE132936 |
Transcriptome Analysis and Functional Identification of Adipose-Derived Mesenchymal Stem Cells in Secondary Lymphedema |
|
| Relations |
| BioSample |
SAMN12087457 |
| SRA |
SRX6088958 |
