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| Status |
Public on Jun 17, 2023 |
| Title |
C1 |
| Sample type |
SRA |
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| Source name |
plasma
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| Organism |
Homo sapiens |
| Characteristics |
tissue: plasma
diagnosis: healthy person
age: 63
gender: male
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| Extracted molecule |
total RNA |
| Extraction protocol |
Extraction of plasma，then total RNA was extracted using a miRNeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer’s instructions.
The strand-specific RNA-seq libraries were prepared using a NEBNext® Ultra™ I RNA Library Prep Kit for Illumina (NEB, MA, USA) following the manufacturer’s instructions.
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
HiSeq X Ten |
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| Data processing |
fastp version 0.17.1
HISAT2 version 2.1.0
String Tie v1.3.4d
DESEQ2 1.18.1
R version 3.4.3
Genome_build: gencode v27
Supplementary_files_format_and_content: abundance measurements
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| Submission date |
Jun 27, 2019 |
| Last update date |
Jun 17, 2023 |
| Contact name |
Minglong Chen |
| E-mail(s) |
chenminglong@njmu.edu.cn
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| Phone |
+86 13809000791
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| Organization name |
The First Affiliated Hospital of Nanjing Medical University
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| Department |
Cardiology
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| Lab |
Cardiology
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| Street address |
300#, Guangzhou Road
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| City |
Nanjing |
| State/province |
Jiangsu |
| ZIP/Postal code |
210029 |
| Country |
China |
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| Platform ID |
GPL20795 |
| Series (1) |
| GSE133420 |
Plasma circRNA sequencing in normal subjects and patients with atrial fibrillation |
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| Relations |
| BioSample |
SAMN12147797 |
| SRA |
SRX6370287 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM3908446_C1_circ_fusion.txt.gz |
130.4 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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