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| Status |
Public on Jul 02, 2019 |
| Title |
MBDK-GFP_RNA-seq |
| Sample type |
SRA |
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| Source name |
MDBK cells expressing GFP
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| Organism |
Bos taurus |
| Characteristics |
tissue: Kidney
cell line: MBDK
cell type: epithelial cells
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| Extracted molecule |
total RNA |
| Extraction protocol |
Ambion mirVana miRNA Isolation Kit (Thermo Fisher Scientific)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
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| Data processing |
paired-end sequencing on an Illumina Hiseq4000
Cutadapt was utilized to remove reads containing undetermined bases, adaptors, and low quality bases. Then sequence quality was verified using FastQC (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/).
genome build: GCA_000003055.3
Supplementary_files_format_and_content: MBDK-GFP-E5_vs_MBDK-GFP_Gene_differential_expression.xls
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| Submission date |
Jul 01, 2019 |
| Last update date |
Jul 07, 2019 |
| Contact name |
Feng Pang |
| E-mail(s) |
19871122asdf@163.com
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| Organization name |
Hainan University
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| Street address |
Renmin Road 58
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| City |
Haikou |
| ZIP/Postal code |
570228 |
| Country |
China |
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| Platform ID |
GPL23295 |
| Series (2) |
| GSE133613 |
Alterations of mRNAs in MDBK cells expressing BPV-13 E5 |
| GSE133614 |
Alterations of miRNAs and mRNAs in MDBK cells expressing BPV-13 E5 |
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| Relations |
| BioSample |
SAMN12173002 |
| SRA |
SRX6385649 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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