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Sample GSM392075 Query DataSets for GSM392075
Status Public on May 21, 2009
Title Activated CD45RA- FoxP3high CD4+ Tregs (Fr. II)
Sample type RNA
 
Source name PBMC
Organism Homo sapiens
Characteristics surface marker: CD127-/low CD25+++ CD45RA-
cell type: T reg
Extracted molecule total RNA
Extraction protocol Total RNA extracted from FACS-sorted T cells was reverse transcribed according to the manufacturer’s instructions (RNeasy Micro kit, Qiagen)
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description n/a
Data processing MAS 5
 
Submission date Apr 14, 2009
Last update date Sep 01, 2016
Contact name Makoto Miyara
E-mail(s) makoto.miyara@frontier.kyoto-u.ac.jp
Phone +81 75 751 3888
Fax +81 75 751 3820
Organization name Kyoto University
Department Institute for Medical Sciences
Lab Department of Experimental Pathology
Street address 53 Shogoin Kawahara-cho,
City Kyoto
ZIP/Postal code 606-8507
Country Japan
 
Platform ID GPL570
Series (1)
GSE15659 Microarray analysis of FoxP3-expressing or non-expressing subsets of human CD4+ T cells
Relations
Reanalyzed by GSE86362

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 124.029 P 0.000753643
AFFX-BioB-M_at 179.298 P 0.00010954
AFFX-BioB-3_at 109.762 P 0.00010954
AFFX-BioC-5_at 147.478 P 0.000224668
AFFX-BioC-3_at 125.61 P 5.16732e-05
AFFX-BioDn-5_at 1155.01 P 4.42873e-05
AFFX-BioDn-3_at 1959.84 P 8.14279e-05
AFFX-CreX-5_at 6200.83 P 5.16732e-05
AFFX-CreX-3_at 6871.98 P 4.42873e-05
AFFX-DapX-5_at 36.8577 P 0.000661624
AFFX-DapX-M_at 404.642 P 0.000389797
AFFX-DapX-3_at 838.1 P 4.42873e-05
AFFX-LysX-5_at 16.5242 M 0.0629293
AFFX-LysX-M_at 60.8613 P 0.0151826
AFFX-LysX-3_at 151.666 P 5.16732e-05
AFFX-PheX-5_at 21.1911 P 0.0103167
AFFX-PheX-M_at 65.5414 P 0.000972149
AFFX-PheX-3_at 87.7067 P 7.00668e-05
AFFX-ThrX-5_at 22.2909 A 0.102165
AFFX-ThrX-M_at 69.6185 P 0.000258358

Total number of rows: 54675

Table truncated, full table size 1634 Kbytes.




Supplementary file Size Download File type/resource
GSM392075.CEL.gz 4.9 Mb (ftp)(http) CEL
GSM392075.CHP.gz 301.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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