|
| Status |
Public on Jan 04, 2010 |
| Title |
Germline AE-#2, Hind SNP array |
| Sample type |
genomic |
| |
|
| Source name |
Germline AE-#2
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: acute myeloid leukemia
|
| Growth protocol |
Cryopreserved peripheral blood or bone marrow samples obtained at diagnosis or remission.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Qiagen DNA blood mini or phenol chloroform.
|
| Label |
Biotin
|
| Label protocol |
As per manufacturer (Affymetrix).
|
| |
|
| Hybridization protocol |
As per manufacturer (Affymetrix).
|
| Scan protocol |
As per manufacturer (Affymetrix).
|
| Description |
PN-AE-#2
|
| Data processing |
CEL files and CHP files (generated by Dynamic Model 3.0) were processed by dChip and model-based expression performed using the PM-only model. Normalization was performed using the reference normalization algorithm developed at St Jude and described in Mullighan et al Nature 2007;446:758. The data matrix contains the normalized expression values produced by that algorithm.
|
| |
|
| Submission date |
Apr 16, 2009 |
| Last update date |
Jan 04, 2010 |
| Contact name |
Guangchun Song |
| Phone |
901-595-5722
|
| Organization name |
St Jude Children's Research Hospital
|
| Department |
Pathology
|
| Lab |
Klco
|
| Street address |
262 Danny Thomas Place
|
| City |
Memphis |
| State/province |
TN |
| ZIP/Postal code |
38105 |
| Country |
USA |
| |
|
| Platform ID |
GPL2004 |
| Series (2) |
| GSE15347 |
Analysis of pediatric acute myeloid leukemia (AML) samples at diagnosis |
| GSE15714 |
Affymetrix SNP array data for pediatric acute myeloid leukemia (AML) samples at diagnosis: Hind SNP array |
|
