|
Status |
Public on Jan 04, 2010 |
Title |
Germline AE-#4, Hind SNP array |
Sample type |
genomic |
|
|
Source name |
Germline AE-#4
|
Organism |
Homo sapiens |
Characteristics |
tissue: acute myeloid leukemia
|
Growth protocol |
Cryopreserved peripheral blood or bone marrow samples obtained at diagnosis or remission.
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Qiagen DNA blood mini or phenol chloroform.
|
Label |
Biotin
|
Label protocol |
As per manufacturer (Affymetrix).
|
|
|
Hybridization protocol |
As per manufacturer (Affymetrix).
|
Scan protocol |
As per manufacturer (Affymetrix).
|
Description |
PN-AE-#4
|
Data processing |
CEL files and CHP files (generated by Dynamic Model 3.0) were processed by dChip and model-based expression performed using the PM-only model. Normalization was performed using the reference normalization algorithm developed at St Jude and described in Mullighan et al Nature 2007;446:758. The data matrix contains the normalized expression values produced by that algorithm.
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|
|
Submission date |
Apr 16, 2009 |
Last update date |
Jan 04, 2010 |
Contact name |
Guangchun Song |
Phone |
901-595-5722
|
Organization name |
St Jude Children's Research Hospital
|
Department |
Pathology
|
Lab |
Klco
|
Street address |
262 Danny Thomas Place
|
City |
Memphis |
State/province |
TN |
ZIP/Postal code |
38105 |
Country |
USA |
|
|
Platform ID |
GPL2004 |
Series (2) |
GSE15347 |
Analysis of pediatric acute myeloid leukemia (AML) samples at diagnosis |
GSE15714 |
Affymetrix SNP array data for pediatric acute myeloid leukemia (AML) samples at diagnosis: Hind SNP array |
|