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Sample GSM396156 Query DataSets for GSM396156
Status Public on Apr 14, 2010
Title MF_I_1
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 1h
drug: Morphine
group no.: 3
large batch: X
plate: 1957998117
hybridization batch: I
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.07541536
ILMN_3160339 6.716527506
ILMN_3161159 7.302373302
ILMN_2758597 6.76047306
ILMN_2644469 12.83753024
ILMN_2656393 7.978051969
ILMN_3160634 7.579978977
ILMN_3161394 10.89456891
ILMN_2610322 6.482095883
ILMN_2741606 7.283377914
ILMN_1247267 9.988912703
ILMN_2594811 7.239821937
ILMN_2689425 6.586063631
ILMN_2745565 6.533321666
ILMN_1212992 6.76334923
ILMN_2629183 6.524337616
ILMN_1251092 8.641696796
ILMN_2715803 10.15671264
ILMN_2762509 11.86742365
ILMN_2496817 10.24179455

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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