NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM400404 Query DataSets for GSM400404
Status Public on May 08, 2009
Title kidney 9
Sample type RNA
 
Source name kidney
Organism Mus musculus
Characteristics tissue: kidney
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description kidney
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.462383
4304921 2.392921
4304922 3.879342
4304923 8.728827
4304925 7.499795
4304927 3.733703
4304928 13.121274
4304929 10.387091
4304930 2.536265
4304931 3.581708
4304932 6.222769
4304933 4.933618
4304934 3.605385
4304935 3.379724
4304937 3.29963
4304938 3.330552
4304939 2.335487
4304940 3.92689
4304941 4.928031
4304942 7.902928

Total number of rows: 1201338

Table truncated, full table size 19839 Kbytes.




Supplementary file Size Download File type/resource
GSM400404.CEL.gz 38.6 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap