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Sample GSM400410 Query DataSets for GSM400410
Status Public on May 08, 2009
Title ovary 15
Sample type RNA
 
Source name ovary
Organism Mus musculus
Characteristics tissue: ovary
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description ovary
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.479458
4304921 2.123289
4304922 4.621719
4304923 7.131323
4304925 6.447406
4304927 3.6443
4304928 11.743444
4304929 10.259001
4304930 3.722119
4304931 2.861824
4304932 7.036643
4304933 5.505171
4304934 3.400926
4304935 3.276959
4304937 5.277066
4304938 4.228802
4304939 2.02217
4304940 3.834919
4304941 5.180301
4304942 7.989611

Total number of rows: 1201338

Table truncated, full table size 19838 Kbytes.




Supplementary file Size Download File type/resource
GSM400410.CEL.gz 39.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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