NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM400432 Query DataSets for GSM400432
Status Public on May 08, 2009
Title testis 37
Sample type RNA
 
Source name testis
Organism Mus musculus
Characteristics tissue: testis
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description testis
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 4.761145
4304921 6.190779
4304922 3.888591
4304923 6.490434
4304925 3.787589
4304927 3.453578
4304928 12.584414
4304929 10.024158
4304930 3.820153
4304931 3.764952
4304932 3.967797
4304933 5.444381
4304934 4.302153
4304935 2.255097
4304937 2.942281
4304938 6.661999
4304939 2.163564
4304940 3.682494
4304941 5.018131
4304942 8.190974

Total number of rows: 1201338

Table truncated, full table size 19842 Kbytes.




Supplementary file Size Download File type/resource
GSM400432.CEL.gz 40.1 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap