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Sample GSM400443 Query DataSets for GSM400443
Status Public on May 08, 2009
Title embryonic stem cell line Bruce4 p13 48
Sample type RNA
 
Source name embryonic_stem_cell_line_Bruce4_p13
Organism Mus musculus
Characteristics cell line: embryonic stem cell line Bruce4 p13
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description embryonic_stem_cell_line_Bruce4_p13
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.323156
4304921 2.198373
4304922 2.832302
4304923 4.090022
4304925 8.918407
4304927 3.490145
4304928 12.818289
4304929 9.898728
4304930 2.737393
4304931 3.268791
4304932 4.855745
4304933 4.053462
4304934 3.665623
4304935 2.020732
4304937 2.690104
4304938 6.286729
4304939 2.150185
4304940 4.421707
4304941 5.363941
4304942 7.295984

Total number of rows: 1201338

Table truncated, full table size 19842 Kbytes.




Supplementary file Size Download File type/resource
GSM400443.CEL.gz 38.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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