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Sample GSM400499 Query DataSets for GSM400499
Status Public on May 08, 2009
Title mammary gland lactating 104
Sample type RNA
 
Source name mammary_gland__lact
Organism Mus musculus
Characteristics tissue: mammary gland lact
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description mammary_gland__lact
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.28529
4304921 2.105471
4304922 3.968663
4304923 7.591557
4304925 6.919149
4304927 3.833875
4304928 11.90273
4304929 10.560609
4304930 3.253438
4304931 3.288766
4304932 4.65504
4304933 5.366149
4304934 3.302845
4304935 2.662428
4304937 3.167599
4304938 4.067143
4304939 1.540505
4304940 4.45658
4304941 5.947657
4304942 8.181273

Total number of rows: 1201338

Table truncated, full table size 19838 Kbytes.




Supplementary file Size Download File type/resource
GSM400499.CEL.gz 39.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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