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Sample GSM400501 Query DataSets for GSM400501
Status Public on May 08, 2009
Title placenta 106
Sample type RNA
 
Source name placenta
Organism Mus musculus
Characteristics tissue: placenta
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description placenta
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.543726
4304921 2.972126
4304922 3.29106
4304923 6.672255
4304925 7.131045
4304927 3.24923
4304928 11.319159
4304929 10.621586
4304930 3.875852
4304931 3.82431
4304932 5.077052
4304933 5.701961
4304934 3.449884
4304935 3.392766
4304937 2.665179
4304938 1.885335
4304939 2.690864
4304940 3.649347
4304941 4.719939
4304942 8.2908

Total number of rows: 1201338

Table truncated, full table size 19836 Kbytes.




Supplementary file Size Download File type/resource
GSM400501.CEL.gz 38.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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