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Status |
Public on Aug 31, 2022 |
Title |
siMESH1-01_1_HG-U133A+2 |
Sample type |
RNA |
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Source name |
H1975 cells
|
Organism |
Homo sapiens |
Characteristics |
cell line: H1975 transfection: plx304 vector and reverse transfeted with the siRNA targeting MESH1 CDS (siMESH1) for 72
|
Treatment protocol |
H1975 cells were reverse transfected with the corresponding siRNA together with the Lipofectamine RNAiMAX reagent (ThermoFisher) and Opti-MEM according to the manufacture's instructions.
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Growth protocol |
All H1975 cells were cultured in the DMEM media supplement with 10% FBS and Penicillin/Streptomycin
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted by RNAeasy kits (Qiagen) according to the manufacturer's instructions.
|
Label |
biotin
|
Label protocol |
Standard Affymetrix protocol
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Hybridization protocol |
Hybridization targets were prepared with MessageAmp™ Premier RNA Amplification Kit (Applied Biosystems/Ambion, Austin, TX) from total RNA, hybridized to GeneChip arrays in Affymetrix GeneChip® hybridization oven 645, washed in Affymetrix GeneChip® Fluidics Station 450
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Scan protocol |
scanned with Affymetrix GeneChip® Scanner 7G according to standard Affymetrix GeneChip® Hybridization, Wash, and Stain protocols. (Affymetrix, Santa Clara,CA).
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Data processing |
The data were analyzed with Agilent 2100 Bioanalyzer G2939A
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Submission date |
Aug 04, 2019 |
Last update date |
Aug 31, 2022 |
Contact name |
Jen-Tsan Chi |
E-mail(s) |
jentsan.chi@duke.edu
|
Phone |
919-668-4759
|
Organization name |
Duke University
|
Department |
Molecular Genetics and Microbiology
|
Street address |
101 Science Drive, DUMC 3382
|
City |
Durham |
State/province |
NC |
ZIP/Postal code |
27708 |
Country |
USA |
|
|
Platform ID |
GPL571 |
Series (1) |
GSE135358 |
The transcriptional response to MESH1 silencing |
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