|
| Status |
Public on Nov 04, 2019 |
| Title |
Baboon 0 h retina 4 |
| Sample type |
SRA |
| |
|
| Source name |
Baboon retina
|
| Organism |
Papio anubis |
| Characteristics |
strain: Olive Baboon
gender: Female
age: 11 years
pmi interval: 0 h
tissue: retina
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Retina/RPE was isolated, stored at 4 degress in RNA later or RNA protect, respectively, and RNA was harvested miRNAeasy micro.
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
BCla-9_1PRRet_S1
Ret0Hr4Aligned.out.bam
|
| Data processing |
Raw files were aligned using RNA-STAR
Rsubread's featurcounts was used to generate read counts
edgeR was used for DE
R enviroment was used to analyze data
Genome_build: GRCm38.p6 and Panu_3.0
Supplementary_files_format_and_content: csv, raw counts from Rsubread
|
| |
|
| Submission date |
Aug 05, 2019 |
| Last update date |
Nov 04, 2019 |
| Contact name |
Les Kallestad |
| Organization name |
University of California Irvine
|
| Department |
Ophthalmology
|
| Lab |
Krzysztof Palczewski
|
| Street address |
829 Health Sciences Rd
|
| City |
Irvine |
| State/province |
CA |
| ZIP/Postal code |
92617 |
| Country |
USA |
| |
|
| Platform ID |
GPL27009 |
| Series (1) |
| GSE135415 |
Tissue- and Species-Specific Patterns of RNA metabolism in Post-Mortem Mammalian Retina and Retinal Pigment Epithelium |
|
| Relations |
| BioSample |
SAMN12498733 |
| SRA |
SRX6658314 |
