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Sample GSM4008725 Query DataSets for GSM4008725
Status Public on Mar 28, 2023
Title Unstimulated vs IL-13 stimulated cells from donor #1
Sample type RNA
 
Channel 1
Source name neutrophils isolated from blood
Organism Homo sapiens
Characteristics donor number: Donor 1
stimulation type: IL-13
Treatment protocol unstimulated or stimulated with 10ng/ml IL-13
Growth protocol Freshly isolated human neutrophils
Extracted molecule polyA RNA
Extraction protocol Qiagen RNAeasy (#74104) kit protocol
Label Cy3
Label protocol Nugen Ovation V2, Nugen FL-Ovation cDNA Fluorescent Module
 
Channel 2
Source name neutrophils isolated from blood
Organism Homo sapiens
Characteristics donor number: Donor 1
stimulation: Unstimulated
Treatment protocol unstimulated or stimulated with 10ng/ml IL-13
Growth protocol Freshly isolated human neutrophils
Extracted molecule polyA RNA
Extraction protocol Qiagen RNAeasy (#74104) kit protocol
Label Cy5
Label protocol Nugen Ovation V2, Nugen FL-Ovation cDNA Fluorescent Module
 
 
Hybridization protocol Standard Agilent protocol
Scan protocol Agilent Technologies Scanner G2505C - 5 microns per pixel
Description Biological replicate 1 of 3. Flipped labeling.
Data processing Agilent Feature extraction version GE2_105_Dec08
 
Submission date Aug 05, 2019
Last update date Mar 28, 2023
Contact name Ilkka Junttila
E-mail(s) ilkka.junttila@tuni.fi
Organization name University of Tampere
Department Institute of Medical and Life Science
Lab Cytokine biology
Street address Arvo Ylpön katu 34
City Tampere
State/province Tampere
ZIP/Postal code 33520
Country Finland
 
Platform ID GPL4133
Series (1)
GSE135426 Human neutrophils stimulated with IL-13.

Data table header descriptions
ID_REF
VALUE Normalized (loess for within array norm. and quantile for between array norm.)) log2 ratio (Cy5/Cy3).

Data table
ID_REF VALUE
12 -0.0610768942399371
13 0.263096604543236
14 0.0546851230330603
15 -0.0871958907576635
16 -0.427599409463252
17 -0.177524602101763
18 -0.243804480719807
19 -0.336749227284367
20 -0.0407547589027253
21 -0.101624149434834
22 -0.112931234333068
23 -0.144960342367593
24 0.0849182741625656
25 -0.0478415719269911
26 -0.0291320152098473
27 -0.131319364958626
28 -0.0133088648170689
29 -0.22658881023031
30 -1.64550163085672
31 -0.27141504290596

Total number of rows: 43376

Table truncated, full table size 1043 Kbytes.




Supplementary file Size Download File type/resource
GSM4008725_Hsha_251485041871_S01_GE2_105_Dec08_1_1.txt.gz 15.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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