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Sample GSM4008729 Query DataSets for GSM4008729
Status Public on Mar 28, 2023
Title Unstimulated vs IL-13 stimulated cells from donor #3
Sample type RNA
 
Channel 1
Source name neutrophils isolated from blood
Organism Homo sapiens
Characteristics donor number: Donor 3
stimulation type: IL-13
Treatment protocol unstimulated or stimulated with 10ng/ml IL-13
Growth protocol Freshly isolated human neutrophils
Extracted molecule polyA RNA
Extraction protocol Qiagen RNAeasy (#74104) kit protocol
Label Cy3
Label protocol Nugen Ovation V2, Nugen FL-Ovation cDNA Fluorescent Module
 
Channel 2
Source name neutrophils isolated from blood
Organism Homo sapiens
Characteristics donor number: Donor 3
stimulation: Unstimulated
Treatment protocol unstimulated or stimulated with 10ng/ml IL-13
Growth protocol Freshly isolated human neutrophils
Extracted molecule polyA RNA
Extraction protocol Qiagen RNAeasy (#74104) kit protocol
Label Cy5
Label protocol Nugen Ovation V2, Nugen FL-Ovation cDNA Fluorescent Module
 
 
Hybridization protocol Standard Agilent protocol
Scan protocol Agilent Technologies Scanner G2505C - 5 microns per pixel
Description Biological replicate 3 of 3. Flipped labeling.
Data processing Agilent Feature extraction version GE2_105_Dec08
 
Submission date Aug 05, 2019
Last update date Mar 28, 2023
Contact name Ilkka Junttila
E-mail(s) ilkka.junttila@tuni.fi
Organization name University of Tampere
Department Institute of Medical and Life Science
Lab Cytokine biology
Street address Arvo Ylpön katu 34
City Tampere
State/province Tampere
ZIP/Postal code 33520
Country Finland
 
Platform ID GPL4133
Series (1)
GSE135426 Human neutrophils stimulated with IL-13.

Data table header descriptions
ID_REF
VALUE Normalized (loess for within array norm. and quantile for between array norm.)) log2 ratio (Cy5/Cy3).

Data table
ID_REF VALUE
12 0.165926349614789
13 0.15940029767644
14 -0.0943363652457307
15 -0.241928644790013
16 -0.225189682542405
17 -0.132615829860908
18 -0.204794066753919
19 -0.491253818140507
20 -0.244754987721636
21 -0.100810567544976
22 -0.412442507949153
23 -0.238414414357683
24 -0.181988977624104
25 0.0924190109809082
26 -0.0762883883623671
27 -0.051940452968827
28 -0.0415130880096433
29 -0.0708025683560054
30 -0.278321467274267
31 -0.232605374890031

Total number of rows: 43376

Table truncated, full table size 1045 Kbytes.




Supplementary file Size Download File type/resource
GSM4008729_Hsha_251485041870_S01_GE2_105_Dec08_1_3.txt.gz 15.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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