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Sample GSM402867 Query DataSets for GSM402867
Status Public on Oct 31, 2011
Title Hemo vs. whole 3
Sample type RNA
 
Channel 1
Source name hemocyte
Organism Anopheles gambiae
Characteristics strain: G3
cell type: hemocytes
Extracted molecule total RNA
Extraction protocol Qiagen
Label Cy5
Label protocol Agilent
 
Channel 2
Source name mosquito
Organism Anopheles gambiae
Characteristics strain: G3
tissue: whole adult female mosquito
Extracted molecule total RNA
Extraction protocol Qiagen
Label Cy3
Label protocol Agilent
 
 
Hybridization protocol Agilent
Scan protocol GenePix
Description Agilent
Data processing In PMID 19500340
 
Submission date May 13, 2009
Last update date Oct 31, 2011
Contact name George Dimopoulos
E-mail(s) gdimopo1@jhu.edu
Phone 443 28 70128
Organization name Johns Hopkins School of Public Health
Department Molecular Microbiology and Immunology
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL8552
Series (1)
GSE33269 Genome-wide transcriptomic profiling of Anopheles gambiae hemocytes reveals pathogen-specific signatures upon bacterial challenge and Plasmodium berghei infection

Data table header descriptions
ID_REF
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
VALUE value
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags

Data table
ID_REF F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians (635/532) Ratio of Means (635/532) VALUE Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) Log Ratio (635/532) F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 F635 Total Intensity F532 Total Intensity SNR 635 SNR 532 Flags
1 61 64 27 42 37 37 37 10 27 71 55 0 23 25 5 20 21 21 21 2 9 46 25 0 12 6.75 6.429 6.782 2.887 11.718 0.257 52 400 100 26 31 3.585 24 2 27 4 3331 1277 2.7 2 -100
2 41 43 14 32 36 36 38 12 31 30 9 0 24 25 4 16 22 22 22 3 13 42 17 0 2.5 2.333 2.8 2.998 3.063 10.153 0.078 52 310 100 7 10 1.322 5 2 7 3 2229 1303 0.417 1 -100
3 185 200 95 47 35 35 37 11 29 95 95 0 297 296 91 30 22 22 22 3 13 100 99 0 0.545 0.602 0.553 0.545 1.608 0.64 0.771 120 608 100 425 439 -0.874 150 275 165 274 24049 35492 14.818 91.333 0
4 45 54 37 68 36 36 38 11 28 48 21 0 24 25 7 28 21 21 21 2 9 53 28 0 3 4.5 4 3.515 3.53 10.135 0.23 52 409 100 12 22 1.585 9 3 18 4 2786 1319 1.455 2 -100
5 36 38 11 28 36 36 38 11 28 18 4 0 24 24 3 12 22 22 22 4 18 22 3 0 0 1 2.6 2.167 4.084 -279.609 0 120 672 100 2 4 Error 0 2 2 2 4510 2917 0 0.5 -100
6 50 53 21 39 35 35 37 11 29 61 35 0 26 26 3 11 22 22 22 2 9 68 38 0 3.75 4.5 5.3 4.412 2.672 11.827 0.191 80 547 100 19 22 1.907 15 4 18 4 4254 2095 1.455 2 -100
7 40 40 13 32 36 36 37 11 29 20 5 0 23 23 3 13 22 22 22 2 9 23 5 0 4 4 4 3.452 2.539 37.011 0.015 120 625 100 5 5 2 4 1 4 1 4842 2745 0.273 0.5 -100
8 39 42 16 38 37 37 38 11 28 22 10 0 24 24 4 16 22 22 22 2 9 35 18 0 1 2.5 4 3.756 2.689 18.162 0.058 120 666 100 4 7 0 2 2 5 2 5027 2925 0.364 1 -100
9 39 44 22 50 37 37 38 11 28 25 13 0 24 24 3 12 21 21 21 2 9 57 23 0 0.667 2.333 3.667 3.306 3.094 24.927 0.044 120 636 100 5 10 -0.585 2 3 7 3 5227 2882 0.545 1.5 -100
10 41 45 16 35 35 35 37 10 27 34 17 0 26 26 4 15 22 22 22 2 9 71 36 0 1.5 2.5 2.333 2.323 3.193 9.935 0.103 52 329 100 10 14 0.585 6 4 10 4 2317 1368 0.8 2 -100
11 47 49 16 32 35 35 37 11 29 50 25 0 28 28 3 10 22 22 22 2 9 86 75 0 2 2.333 2.857 2.745 3.083 11.438 0.064 80 542 100 18 20 1 12 6 14 6 3895 2272 1.091 3 -100
12 46 52 22 42 36 36 37 10 27 46 28 0 25 28 11 39 22 22 22 2 9 53 40 0 3.333 2.667 3.25 2.261 3.153 3.275 0.621 32 230 100 13 22 1.737 10 3 16 6 1678 881 1.5 3 -100
13 39 42 17 40 35 35 36 10 27 29 14 0 23 23 3 13 22 22 22 3 13 15 5 0 4 7 4.5 4.15 2.79 20.614 0.051 120 715 100 5 8 2 4 1 7 1 5019 2794 0.6 0.333 -100
14 37 39 20 51 36 36 37 11 29 20 7 0 23 23 3 13 21 21 22 2 9 45 17 0 0.5 1.5 2.929 2.314 3.468 20.342 0.057 120 639 100 3 5 -1 1 2 3 2 4731 2811 0.182 0.5 -100
15 50 68 56 82 35 35 36 10 27 62 43 0 29 34 14 41 22 22 23 3 13 87 50 0 2.143 2.75 3.208 2.863 2.086 4.414 0.65 32 236 100 22 45 1.1 15 7 33 12 2180 1086 3.2 3.667 -100
16 43 56 73 130 34 34 36 11 30 35 18 0 25 28 12 42 22 22 22 2 9 50 30 0 3 3.667 4.083 3.399 3.197 8.014 0.476 80 478 100 12 28 1.585 9 3 22 6 4482 2235 1.818 3 -100
17 53 57 23 40 36 36 37 11 29 56 43 0 26 27 5 18 21 21 21 2 9 78 52 0 3.4 3.5 3.5 3.333 2.714 9.03 0.234 80 537 100 22 27 1.766 17 5 21 6 4556 2129 1.818 3 -100
18 53 57 27 47 37 37 38 11 28 65 30 0 25 26 6 23 21 21 21 2 9 73 42 0 4 4 3.6 3.728 3.273 8.595 0.252 80 517 100 20 25 2 16 4 20 5 4592 2079 1.727 2.5 -100
19 40 46 26 56 34 34 36 10 27 42 21 0 25 27 7 25 22 22 22 2 9 58 31 0 2 2.4 2.857 3.028 2.817 7.367 0.241 120 600 100 9 17 1 6 3 12 5 5461 3194 1 2.5 -100
20 39 43 21 48 36 36 38 11 28 26 11 0 23 24 4 16 22 22 22 2 9 29 15 0 3 3.5 3.5 3.316 2.824 11.723 0.159 120 663 100 4 9 1.585 3 1 7 2 5108 2836 0.455 1 -100

Total number of rows: 16058

Table truncated, full table size 2605 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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