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Status |
Public on May 05, 2021 |
Title |
Muscle_Old SX_biological rep5 |
Sample type |
RNA |
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|
Source name |
vastus lateralis, old SX
|
Organism |
Homo sapiens |
Characteristics |
gender: male age (y): 69.3 disease state: metabolic syndrome tissue: vastus lateralis muscle
|
Growth protocol |
Vastus lateralis muscle biopsy from men
|
Extracted molecule |
total RNA |
Extraction protocol |
Vastus lateralis biopsies were snap-frozen in liquid N2. RNA was isolated using a TissueRuptor and RNeasy Fibrous Tissue Mini Kit (Qiagen). Integrity of RNA was verified using an Agilent Bioanalyser with the RNA 6000 Nano labchip® kit (Agilent). Concentration and purity was determined with a Nanodrop ND-1000 spectrophotometer (Nanodrop Technologies). The depletion of the ribosomal fractions was processed using 2 µg of total RNA and magnetic beads from Ribominus Kit (Invitrogen).
|
Label |
biotin
|
Label protocol |
Biotinylated single stranded cDNA were prepared from 400 ng of depleted total RNA according to the Affymetrix WT protocol (Ambion WT Expression kit).
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|
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Hybridization protocol |
Following fragmentation and terminal labeling, 5.5 µg of single stranded cDNA were hybridized for 16 h at 45°C and 60 rpm on GeneChip® Human Exon 1.0 ST Array in the Affymetrix Oven. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 with Hybridization Wash and Stain Affymetrix kit.
|
Scan protocol |
GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
|
Data processing |
Data were generated with Affymetrix Expression Console v 1.2.1 software using robust multiarray average (RMA) algorithm. Affymetrix data files were processed using GeneSpring GX 14.9 13 (Agilent ).
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|
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Submission date |
Aug 26, 2019 |
Last update date |
May 05, 2021 |
Contact name |
Daniel Bechet |
E-mail(s) |
daniel.bechet@inrae.fr
|
Phone |
33473624178
|
Organization name |
INRA
|
Department |
UNH
|
Lab |
Proteostasis
|
Street address |
Theix
|
City |
Saint Genes Champanelle |
ZIP/Postal code |
63122 |
Country |
France |
|
|
Platform ID |
GPL5175 |
Series (1) |
GSE136344 |
Muscle transcriptomic profiling of chronological aging and metabolic syndrome in men |
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